TCONS_00048344-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048344-protein
Unique NameTCONS_00048344-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length125

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048344-protein ID=TCONS_00048344-protein|Name=TCONS_00048344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
RWSEINVTQLSISLLHEIKTNKMADEKAAKKIKSHEPVDFSFLRQEETQT
QKLKRKIKENPLVPIGMGATVAALVLGIVNFKRGNQRQQQVMMRARVLAQ
GGTVVALVTGLYFAAMRDKKERANR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030763XLOC_030763Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048344TCONS_00048344Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 59..110
e-value: 1.3E-22
score: 79.6
IPR007667Hypoxia induced protein, domainPROSITEPS51503HIG1coord: 34..125
score: 25.011

Blast
[Close]
BLAST of TCONS_00048344-protein vs. Swiss-Prot (Human)
Match: HIG2A (HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.100e-20
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:   44 RQEETQTQKLKRKIKENPLVPIGMGATVAALVLGIVNFKRGNQRQQQVMMRARVLAQGGTVVALVTGLYFAAMRDKK 120
            R  E+  +K  RK +ENP+VPIG  AT AAL  G+ +F RGN ++ Q+MMR R+ AQG TV A++ GL   AM+ + 
Sbjct:   30 RNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGLAVTAMKSRP 106
The following BLAST results are available for this feature:
BLAST of TCONS_00048344-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HIG2A3.100e-2048.05HIG1 domain family member 2A, mitochondrial OS=Hom... [more]
back to top