TCONS_00047041-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047041-protein
Unique NameTCONS_00047041-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1232

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047041-protein ID=TCONS_00047041-protein|Name=TCONS_00047041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1232bp
MLCLLNDTPVFRMLLSVIDDVAQQLERFVINEELKSSLEEIAGYCMAILE
QVLEKQPVFLELSKHHMSSMIVSPLDELLLSVNPRTGRPDYLCMIARYMT
YANIQASISLSVVKIIKLACEGLRVQKEIVELLAQNAVQSKELLVGFAEH
LEVPDPELHENVEEFTMDENEEQSNEKQDLVRQNIVQLLTNTLNQPSVNI
AQFLLGFDTRQSLARTNLQDPGVRGFPKTCLHSIITILNRGVSATCGPDA
RLLTPKLSESLYRLMYQLCAHQEIGGAVRRYLRTNTDFYMKHIQALPFLP
TDGTELDLDEIQYIRLANQQSWFLKTVAIDLRVVATSRMRSALQQLLGAL
YSEQAAPDLLQGGGDVTQRTLEATQMTVGDSLSRTMLGSAFRFGSDEKSL
ILSLLSSVSFTQRYPPNIELQFFDYGAVEQIITSCEELDEMGTPLCDVRK
LYKVLMGEINNSQLVVGASQKQEILKEVKGVLKHAVDRNLVRESFHSKRN
AFDAWRQVVEITFAVCPADMIPVDKKQAILMEILNQLMPRITDEDALPEL
ASAVAGTVLSLMANFWFTCTQIDSMKNPNEISVISMETVCAIFPGLVEGI
IAVGSGQARTRANLYGAFLYYIQIGQMYNSITKEGEEEGGIFGKQNKETW
ETKTMQTLYKYGDSFLDIVAKDMCQGTCIARMMAMSTMDAIASLDWKHKY
LMLMTSRGYLRVLVDQLLEEDAELQSVLSLQPQSMKPLYLFESKMSFLAK
VASTDYGAQTLLQFGLISRLTECQFLDFHVEKPTLLTNTNTMAYTHSEDP
FLPSLLERYSKIFSSFARLILAFLSSVGIQHQVAISQIQNLVMNHEDLFN
TILNDSGESHSMTSLKQLSLAIAIVSLLPITDKRDDAWEMLTEEQRAWRS
FMNRIHRLMLSLLNKYSITACKKIMNQTLQAENLDSSMITSPSANQMSVT
ALETQNALLQIRSRVLTFCKNVISSQGLSGPYARVMFAPSFTDNVGQETR
LITGKPVSKKQLPNLSLIVGDLKSCPSQLSKCLDHLKVLDRKIDSLQDLP
SEELREIISQESESERLPFHQRQVVALRILRKLRELRQNEANLLSYIIEH
SVYILWRHIDYYYLHCVPTDGSFMVSDTSRSNHSRARHLNATDSSFSSPL
RSTTSAVTATLSANQSRLDQTLPTAVDKDEINDLKAETPKILTDKLWQSI
LEADKVHVSSRSRLSFLSSLVRRLQSIVKLNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030005XLOC_030005Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047041TCONS_00047041Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021827Nup186/Nup192/Nup205
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005643 nuclear pore
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021827Nucleoporin Nup186/Nup192/Nup205PFAMPF11894Nup192coord: 1..876
e-value: 2.5E-134
score: 449.2

Blast
BLAST of TCONS_00047041-protein vs. Swiss-Prot (Human)
Match: NU205 (Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1 SV=3)

HSP 1 Score: 551.206 bits (1419), Expect = 2.759e-169
Identity = 377/1281 (29.43%), Postives = 659/1281 (51.44%), Query Frame = 0
Query:    1 MLCLLNDTPVFRMLLSVIDDVAQQLERFVINEELKSSLEEIAGYCMAILEQVLEKQPVFLELSKHHMSSMIVSPLDELLLSVNPRTGRPDYLCMIARYMTYANIQASISLSVVKIIKLACEGLRVQKEIVELLAQNAVQSKELLVGFAEHLEVPDPELHENVEEFTMDENEEQSNEKQDLVRQNIVQLLTNTLNQPSVNIAQFLLGFDTRQSLARTNLQDPGVRGFPKTCLHSIITILNRGVSATCGPDARLLTPKLSESLYRLMYQLCAHQEIGGAVRRYLRTNTDFYMKHIQALPFLPTDGTELDLDEIQYIRLANQQSWFLKTVAIDLRVVATSRMRSALQQLLGALYSEQAAPDLLQGGGDVTQRTLEATQMTVGDSLSRTMLGSAFRFGSDEKSLILSLLSSVSFTQRYPPNIELQFFDYGAVEQIITSCEELDEMGTPLCDVRKLYKVLMGEINNSQLVVGASQKQEILKEVKGVLKHAVDRNLVRESFHSKRNAFDAWRQVVEITFAVCPADMIPVDKKQAILMEILNQLMPRITDEDALPELASAVAGTVLSLM---------------------ANFWFTCTQIDSMKNPNEISVISMETVC-----AIFPGLVEGIIAVGSGQARTRANLYGAFLYYIQIGQ--------------MYNSITKEGEEEGGIFGKQNKETWETKTMQTLYKYGDSFLDIVAKDMCQGTCIARMMAMSTMDAIASLDWKHKYLMLMTSRGYLRVLVDQLLEEDAELQSVLSLQPQSMKPLYLFESKMSFLAKVASTDYGAQTLLQFGLISRLTECQFLDFHVEKPTLLTNTNTMAYTHSEDPFLPSLLERYSKIFSSFARLILAFLSSVGIQHQVAISQIQNLVMNHEDLFNTILNDSGESHSMTSLKQLSLAIAIVS--LLP--ITDKRDDAWE-MLTEEQRAWRSFMNRIHRLMLSLLNKYSITACKKIMNQTLQAENLDSSMITSPSANQMSVTALETQNALLQIRSRVLTFCKNVISSQGLSGPYARVMFAPSFTDNVGQE-TRLITGKPVSKK-QLPNLSLIVGDLKSCPSQLSKCLDHLKVLDRKIDSLQDLPSEELREIISQ--ESESERLPFHQRQVVALRILRKLRELRQNEANLLSYIIEHSVYILWRHIDYYYLHCVPTDGSFMVSDTSRSNHSRARHLNATDSSFSSPLRSTTSAVTATLSANQSRLD-QTLPTAVDKDEINDLKAETPKILTDKLWQSILEADKVHVSSRSRLSFLSSLVRRLQSIVKLN 1231
            M  LLN++P+  + LS++++  +QL+ +      K  LE+   +C+A+L   L+K+ +F++L +    ++IV PL++LL  +NPRT + D +  IARY+ + N    ++    KI+        +Q ++V     +   S++L+ GF E L+  D E    +EE +  E E++    +   R +I+ LL  +L     N+A +LLGF+ ++ ++ TNLQDPGV G P+TCLH+I+ IL +G     GP A   +P+L+E  Y+++YQLCA  +  G   RYLRT+ DF    +Q LPF      E +      I + NQ SW +KT +I+LRV + +R RS  Q+LL  L  +        G G +       +     D+ ++             +  IL++L S+ F+Q  P  ++L FFD   +EQ+I +CE  +  G  +C+V+ L++VL+ E+N  Q +    Q+  +++E+  VL++ V RN + +  H+KR+A ++WRQ+VEI    CP D+I  + +Q I+ +IL  +  +I D++A  EL   VAG V +L                      A++ F      +   P E  ++   ++       I   L++ I+  G G  R R +LYG+ LYY+QI Q              M+  +T   +    +F K  +E      +  +  YG + +++V +D C G  I RM+A++ +D I S+D + ++L+ +++ GYL+VLVD L+E+D  LQS+L+ QP  +K LY +ESKM+FL +VA    GA  LL+ G+I RL +CQ  D   E     T+  +M        F+P+ ++RY +I     +L    L+S   QH  A  Q+   +++H D    IL    +  S  SL++L+L   I+S   LP  +++   D  E  L E Q      + R  R  L LL+++      ++     Q +N++   ++            E + A+ QI + V+ +C++++     +  +A  +F PS ++ V ++  R  T  PV    +LP L +I+  LK   +      D  +    K+ +++ LP +E++E+      +  +++   Q+ V+A R L K+   R    +L S+IIE  ++ILWRH++YY LHC+PTD                    + DS F+S     +  +  +  A+++ LD ++    V + +++ L+A+      + L + +L+ + ++   RSR SF+ +LVRR++ +++++
Sbjct:  806 MYHLLNESPMLELALSLLEEGVKQLDTYAPFPG-KKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSISQKLMAGFVECLDCEDAEEFVRLEEGS--ELEKKLVAIRHETRIHILNLLITSLECNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVRESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQYLPF---SNKEYE------ISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGIEDENRSVSGFLHFDTATKV------------RRKILNILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTVCNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQDVHDKILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQKETSVLGPAEAHYAFMLDSCFTSPPPEENPLVGFASIGDSSLYIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPED----VFSKLQRE-----NIAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKIQQGALELLRSGVIVRLAQCQVYDMRPE-----TDPQSMFGMRDPPMFIPTPVDRYRQILLPALQLCQVILTSSMAQHLQAAGQVLQFLISHSDTIQAILR--CQDVSAGSLQELALLTGIISKAALPGILSELDVDVNEGSLMELQ----GHIGRFQRQCLGLLSRFG--GSDRLRQFKFQDDNVEGDKVSKKD---------EIELAMQQICANVMEYCQSLMLQSSPTFQHAVCLFTPSLSETVNRDGPRQDTQAPVVPYWRLPGLGIIIYLLKQSANDFFSYYDSHRQSVSKLQNVEQLPPDEIKELCQSVMPAGVDKISTAQKYVLARRRLVKVINNRAKLLSLCSFIIETCLFILWRHLEYYLLHCMPTD--------------------SQDSLFASRTLFKSRRLQDSF-ASETNLDFRSGLAIVSQHDLDQLQADAINAFGESLQKKLLDIEGLYSKVRSRYSFIQALVRRIRGLLRIS 2010          
The following BLAST results are available for this feature:
BLAST of TCONS_00047041-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU2052.759e-16929.43Nuclear pore complex protein Nup205 OS=Homo sapien... [more]
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