TCONS_00045985-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045985-protein
Unique Name	TCONS_00045985-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	241

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045985-protein ID=TCONS_00045985-protein|Name=TCONS_00045985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MAAHDGGFSGEGSNQPIKTTPKEALVMASILKEMGVNEYEPRVINQMIEF
SYRYITDVIEDARVYSQHANRKNLNLDDVKLAVTQKLDHSFTSPPPREFL
LEIARSKNSSPLPLITDRSGLRLPPERYCLTGTNYKVKGLPKKAQSHSRK
QAQNSDKSGKSTKTSTASSNKTALTSTLAATNIPLQSPSIATKGTFPTQA
AIIPSLPKGINPSNKGITPSNKGITNLLKRKHEGDDDDYDA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029392	XLOC_029392	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045985	TCONS_00045985	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003162	TFIID-31
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
molecular_function	GO:0046982	protein heterodimerization activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.20.10		coord: 21..88 e-value: 1.4E-17 score: 63.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..170
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 19..138 e-value: 4.9E-48 score: 162.1
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 21..137 e-value: 3.28672E-64 score: 197.069
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..84

Blast

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BLAST of TCONS_00045985-protein vs. Swiss-Prot (Human)
Match: TAF9B (Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.567e-62
Identity = 112/255 (43.92%), Postives = 151/255 (59.22%), Query Frame = 0

Query:   12 GSNQPIKTTPKEALVMASILKEMGVNEYEPRVINQMIEFSYRYITDVIEDARVYSQHANRKNLNLDDVKLAVTQKLDHSFTSPPPREFLLEIARSKNSSPLPLITDRSGLRLPPERYCLTGTNYKVKGLPKKAQSHSRKQAQNS--DKSGKSTKTSTAS------SNKTALTSTLAATNIPLQSPSIATKGTFPTQAAIIPSLPKG-------INPSNKGITPSNKGIT-------------NLLKRKHEGDDDD 238
            G   P K  P++ALVMA ILK+MG+ EYEPRVINQM+EF++RY+T +++DA++YS HA + N++ DDV+LA+  + D SFTSPPPR+FLL+IAR KN +PLPLI   +G RLPP+RYCLT  NY++K L KK  +  R   + S    S K T  + A+       NK A   ++ +    +Q P        P+Q+  +  +P         INPS  G  P N  IT             N LKRKHE DDD+
Sbjct:    4 GKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIP--------PSQSTPVKPVPATTAVQNVLINPSMIG--PKNILITTNMVSSQNTANEANPLKRKHEDDDDN 248

The following BLAST results are available for this feature:

BLAST of TCONS_00045985-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045985-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TAF9B	4.567e-62	43.92	Transcription initiation factor TFIID subunit 9B O...	[more]

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TCONS_00045985-protein (polypeptide) - C. hemisphaerica