TCONS_00044121-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044121-protein
Unique NameTCONS_00044121-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length118

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044121-protein ID=TCONS_00044121-protein|Name=TCONS_00044121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEESDGAHDTENEGVSSSSDKKKRLFTKEIRCMLYGFGDEQVPYTETVEM
LDDLLIQFITNTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTM
NEELKKARKAFDAESYGE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027768XLOC_027768Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044121TCONS_00044121Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006366 transcription from RNA polymerase II promoter
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availableGENE3D1.10.20.10coord: 26..68
e-value: 3.3E-18
score: 64.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 25..113
e-value: 7.9E-33
score: 112.3
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 23..112
e-value: 4.76833E-41
score: 132.269
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 25..68

Blast
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BLAST of TCONS_00044121-protein vs. Swiss-Prot (Human)
Match: TAF13 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.230e-50
Identity = 69/97 (71.13%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   21 KKKRLFTKEIRCMLYGFGDEQVPYTETVEMLDDLLIQFITNTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTMNEELKKARKAFDAESYG 117
            K+KRLF+KE+RCM+YGFGD+Q PYTE+V++L+DL+I+FIT  T KAM++G++GRV VEDIV+LIRKDP+K+ARVK+LLTMNEELK+ARKAFD  +YG
Sbjct:   27 KRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYG 123
The following BLAST results are available for this feature:
BLAST of TCONS_00044121-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF131.230e-5071.13Transcription initiation factor TFIID subunit 13 O... [more]
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