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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00044049-protein ID=TCONS_00044049-protein|Name=TCONS_00044049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
SDEDIHQCGRCKVVFHDVTAYLKHKQSKACKTIKSSSPNKQQASPTKTPQ
QQYSSSGDTQQSQVQPMGNEQITTTTQQQQQQQQQQQQQQQQQQQQQQHQ
QSQSQTENNQNILEAAAKNTIFRDSFISIRNEIQDIGTEKRGVEENEPQY
TSEDLWSKEKTGDDILLSQEDIVDEAGKKRRARQPKPFDENEIGTSEPMD
SLDSPPKAKRKSRPPRRHKPHYDPRDEARHEGADGAGPSGLHSASSSLLE
LTVRGRGRGRGGRHSSHRCPICLLLFPSRMTMIEHKRKHTKVHKCKICNE
GFYTEDRLEKHATKETHSHPCDQCERSYVNKQSLMRHKLSHSEKTHKCDQ
CSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPEKLKRHLMIHAPD
RPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFKCDQCDKSFARTD
NLREHIRSHTGVFRYYCTVCGKGQPGPKKFLQHMLKQHNVENAEIPRPFD
DAAPEPLIQQHKAVIEAEAAARLVRAANNVKKDQGKKVRKENIETTEIPL
DGAVAIAAGLNPMIQSTLMPSPTQNVTSEQQQAFVAAASRGNIETLYTIS
HTGQGSGSPQFQISRAQDTMVRNEQLLREQLAREGLTTREVAITSAGA Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 76..98 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 355..375
e-value: 1.3E-4
score: 21.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 425..449
e-value: 1.5E-16
score: 59.6 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 376..389
e-value: 3.5E-6
score: 26.5 |
| None | No IPR available | GENE3D | 2.160.10.10 | | coord: 1..119
e-value: 4.2E-6
score: 26.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 450..494
e-value: 2.0E-14
score: 53.2
coord: 390..424
e-value: 6.4E-12
score: 45.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 304..330
e-value: 1.4E-7
score: 31.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 265..303
e-value: 2.0E-6
score: 27.5
coord: 331..354
e-value: 2.1E-8
score: 33.9 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 437..459
e-value: 2.9E-6
score: 27.3
coord: 346..369
e-value: 0.0096
score: 16.2
coord: 375..397
e-value: 6.9E-5
score: 23.0
coord: 404..431
e-value: 0.0057
score: 17.0 |
| None | No IPR available | PFAM | PF13912 | zf-C2H2_6 | coord: 292..311
e-value: 0.045
score: 13.6
coord: 319..343
e-value: 0.01
score: 15.7
coord: 267..289
e-value: 0.019
score: 14.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 134..163 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 175..246 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 24..112 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 375..397
e-value: 7.1E-4
score: 28.9
coord: 437..459
e-value: 9.7E-5
score: 31.7
coord: 6..26
e-value: 98.0
score: 4.5
coord: 346..369
e-value: 0.0029
score: 26.8
coord: 267..289
e-value: 0.029
score: 23.5
coord: 465..488
e-value: 3.8
score: 16.5
coord: 404..431
e-value: 4.9
score: 16.0
coord: 293..317
e-value: 0.096
score: 21.8
coord: 319..341
e-value: 0.06
score: 22.5 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 348..369 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 377..397 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 269..289 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 439..459 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 321..341 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 295..317 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 375..402
score: 13.484 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 404..436
score: 12.133 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 319..346
score: 10.263 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 437..461
score: 13.817 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 346..374
score: 11.053 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 293..318
score: 9.141 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 417..472 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 343..402 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 319..365 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 267..312 |
Blast
BLAST of TCONS_00044049-protein vs. Swiss-Prot (Human)
Match: ZN341 (Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 PE=1 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 2.179e-40 Identity = 85/220 (38.64%), Postives = 119/220 (54.09%), Query Frame = 0
Query: 266 SHRCPICLLLFPSRMTMIEHKRKHT-----------KVHKCKICNEGFYTEDRLEKHATKETHSHPCDQCERSYVNKQSLMRHKLSH-SEKTHKCDQCSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPEKLKRHLMIHAPDRPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFKCDQCDKSFARTDNLREHIRSHTGVFRYYCTVCGKG 473
S+RC +C FPS + H+ H+ V+KC C + T + LE H TH+ PC C++ + ++ L RH +H S KC C + F+ LK H +HS + + C VC+ F+R +KLKRH++IH P + Y CPF H GC K F R DKL H+ SHS +K KC C KSF+R +L EH R+HTG +++ C C KG
Sbjct: 502 SYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDNAVYKCVKCVNKYSTPEALEHHLQTATHNFPCPHCQKVFPCERYLRRHLPTHGSGGRFKCQVCKKFFRREHYLKLHAH-IHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFK-KYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKG 719
The following BLAST results are available for this feature:
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