TCONS_00022559-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022559-protein
Unique NameTCONS_00022559-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022559-protein ID=TCONS_00022559-protein|Name=TCONS_00022559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
IKNPSSSTFYTNRALCYLKQKKWQQAIADCQHAIEIESKSVKGHFFLAQA
YLEHQLYDEAIANFKQAHELAKDQKLNFGDDITAALRTAKKKRWNQLEEK
RIEQEVSLEKYLKELIIADKEKKLDALIKDDDTASEEGVKMVDEAANKRI
AEVTDLFQQLDDRRKKREVPDQLCGKISFEVMREPVIAPSGITYDKKDIE
EHLQRVGHFDPITRSELKATQLIPNLAMKEVIDEFLEHNGWAEDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012649XLOC_012649Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022559TCONS_00022559Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR003613Ubox_domain
IPR011990TPR-like_helical_dom
IPR013083Znf_RING/FYVE/PHD
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 7..40
e-value: 2.8E-6
score: 36.8
coord: 41..74
e-value: 0.012
score: 24.8
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 41..74
score: 8.555
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 7..40
score: 7.729
IPR003613U box domainSMARTSM00504Ubox_2coord: 172..235
e-value: 6.1E-27
score: 105.5
IPR003613U box domainPFAMPF04564U-boxcoord: 169..241
e-value: 1.8E-27
score: 95.2
IPR003613U box domainPROSITEPS51698U_BOXcoord: 168..242
score: 33.845
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 39..165
e-value: 1.4E-10
score: 40.7
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 2..38
e-value: 7.0E-9
score: 35.1
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 3..75
NoneNo IPR availablePFAMPF12895ANAPC3coord: 4..65
e-value: 3.0E-8
score: 33.6
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 167..243
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 168..244
e-value: 1.7E-7
score: 30.4
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..74
score: 15.694

Blast
[Close]
BLAST of TCONS_00022559-protein vs. Swiss-Prot (Human)
Match: CHIP (E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.087e-103
Identity = 145/249 (58.23%), Postives = 190/249 (76.31%), Query Frame = 0 
Query:    2 KNPSSSTFYTNRALCYLKQKKWQQAIADCQHAIEIESKSVKGHFFLAQAYLEHQLYDEAIANFKQAHELAKDQKLNFGDDITAALRTAKKKRWNQLEEKRIEQEVSLEKYLKELIIADKEKKLDALIKD-----DDTASEEGVKMVDEAANKRIAEVTDLFQQLDDRRKKREVPDQLCGKISFEVMREPVIAPSGITYDKKDIEEHLQRVGHFDPITRSELKATQLIPNLAMKEVIDEFLEHNGWAEDY 245
            +NP  + +YTNRALCYLK ++ +QA+ADC+ A+E++ +SVK HFFL Q  LE + YDEAIAN ++A+ LAK+Q+LNFGDDI +ALR AKKKRWN +EE+RI QE  L  YL  LI A++E++L+   ++     DD+        ++   +K +A++ +LF Q+D++RKKR++PD LCGKISFE+MREP I PSGITYD+KDIEEHLQRVGHFDP+TRS L   QLIPNLAMKEVID F+  NGW EDY
Sbjct:   55 RNPLVAVYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 303
The following BLAST results are available for this feature:
BLAST of TCONS_00022559-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIP1.087e-10358.23E3 ubiquitin-protein ligase CHIP OS=Homo sapiens G... [more]
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