TCONS_00022395-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022395-protein
Unique NameTCONS_00022395-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length181

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022395-protein ID=TCONS_00022395-protein|Name=TCONS_00022395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MHNTEESTTPSEPLDIKCCSCYRSIQSTDWIRQAKQNVYHLACFSCDVCK
RQLSTGEEFALLDDKILCKLHYVEQLELPASLSENHVLHVPPTPRPEIMP
TPDVDSWNKPRNKRMRTSFSEEQVQVLQANFEIDANPDSAELERIASDVC
LPKRVTQVWFQNSRARQKKQQQQAKIHGMDN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012557XLOC_012557Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022395TCONS_00022395Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR001356Homeobox_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 17..71
e-value: 1.1E-13
score: 61.5
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 18..74
e-value: 1.7E-13
score: 50.4
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 18..53
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 16..78
score: 12.821
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 112..174
e-value: 4.0E-18
score: 76.2
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 113..169
e-value: 1.5E-17
score: 63.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 110..170
score: 16.908
NoneNo IPR availableGENE3D1.10.10.60coord: 105..179
e-value: 1.6E-20
score: 72.1
NoneNo IPR availableGENE3D2.10.110.10coord: 12..89
e-value: 6.3E-13
score: 48.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..111
NoneNo IPR availableCDDcd00086homeodomaincoord: 113..164
e-value: 2.9191E-12
score: 57.2533
NoneNo IPR availableCDDcd09379LIM2_AWHcoord: 18..72
e-value: 1.52194E-33
score: 114.057
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 17..44
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 97..172

Blast
[Close]
BLAST of TCONS_00022395-protein vs. Swiss-Prot (Human)
Match: LHX6 (LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.927e-43
Identity = 77/163 (47.24%), Postives = 102/163 (62.58%), Query Frame = 0 
Query:   14 LDIKCCSCYRSIQSTDWIRQAKQNVYHLACFSCDVCKRQLSTGEEFALLDDKILCKLHY---VEQLELPASLSENHVLHVPPTPRPEIMPTPDVDSWNKPRNKRMRTSFSEEQVQVLQANFEIDANPDSAELERIASDVCLPKRVTQVWFQNSRARQKKQQQQ 173
               KC  C R I ++DW+R+A+ N YHLACF+C  CKRQLSTGEEF L+++K+LC++HY   +E L+  A       L          +P+ + DS  KP  KR RTSF+ EQ+QV+QA F  D NPD+  L+++A    L +RV QVWFQN RAR KK   Q
Sbjct:  127 FGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLE-------GAVPS-EQDSQPKP-AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQ 280
The following BLAST results are available for this feature:
BLAST of TCONS_00022395-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LHX61.927e-4347.24LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 ... [more]
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