TCONS_00022279-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022279-protein
Unique NameTCONS_00022279-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022279-protein ID=TCONS_00022279-protein|Name=TCONS_00022279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
RNDIYLTKKAQKSRSSAYKEWTDQETLLLLEGLELHKDDWNKVSEHVGTR
TQDECIMQFLKLPIEDPYLEKDSTGFLGPLAFQPTPFSQSGNPIMSTVSF
LASIVDPRVASAAAKAAVDEFSRLKEEIPEELIDAHVEKAKAEMPNGVSE
EKPTEEAAPMQVDEAVPTTTPTTNAPTTETTPSTTPATDPAQPQVNGEVH
QDEKPQSETPTPAPAPPKEPSEEEKKKLANREKVPVGNIKTAAAAAIASA
AVKAKYLAQVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDKEREI
LEQQRQSLIKERQEFFADQLKAQEARASKTPAIADFFPHGPQAKPAAVPT
PEETPAAPPSTTAAPMMGNIPSQQPQPTPMQPQPTPPAGLLAQPHSQTEN
KIPNPDFLQHQMTAARAGGAALSVLSPLDPAKGDTQSDASTTGVQSTSGE
LLTAKAPMPLSSAQEDKSKPPELPPYGAVPQQVQAPPAPMNTPPPVTKGR
SRGRGKGRASQSANVAQQQQQQQQQDMQQQQQQQHQAFMGNLPPYSGYTG
FPGNQMPPGMPGMQGFQPNPMMQGGNMMPNLNQGQFPPGQFPPGAGGQFP
PMG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012495XLOC_012495Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022279TCONS_00022279Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR032448SWIRM-assoc
IPR032451SMARCC_C
IPR017884SANT_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 513..533
NoneNo IPR availableCOILSCoilCoilcoord: 287..314
NoneNo IPR availableGENE3D1.10.10.60coord: 1..62
e-value: 9.5E-11
score: 41.0
NoneNo IPR availableGENE3D1.20.58.70coord: 223..539
e-value: 5.5E-4
score: 19.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..603
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..233
IPR001005SANT/Myb domainSMARTSM00717santcoord: 17..65
e-value: 7.7E-10
score: 48.7
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 20..62
e-value: 4.5E-10
score: 39.4
IPR032448SMARCC, SWIRM-associated domainPFAMPF16498SWIRM-assoc_3coord: 105..144
e-value: 7.6E-15
score: 54.8
IPR032451SMARCC, C-terminalPFAMPF16495SWIRM-assoc_1coord: 244..326
e-value: 1.3E-28
score: 98.8
IPR017884SANT domainPROSITEPS51293SANTcoord: 16..67
score: 21.347
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 18..69

Blast
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BLAST of TCONS_00022279-protein vs. Swiss-Prot (Human)
Match: SMRC2 (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.360e-80
Identity = 195/371 (52.56%), Postives = 237/371 (63.88%), Query Frame = 0 
Query:    1 RNDIYLTKKA---QKSRSSAYKEWTDQETLLLLEGLELHKDDWNKVSEHVGTRTQDECIMQFLKLPIEDPYLEKDSTGFLGPLAFQPTPFSQSGNPIMSTVSFLASIVDPRVASAAAKAAVDEFSRLKEEIPEELIDAHVEK--------AKAEMPNGVS---------------EEKPTEEAAP--MQVDEAVPTTTPTTNAPTTETTPSTTPATDPAQPQVNGEVHQDEKPQSET---PTPAPAPPKEP-------------SEEEKKKLANREKVPVGNIKTAAAAAIASAAVKAKYLAQVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDKEREILEQQRQSLIKERQEFFADQLKAQEARA 327
            R D+Y  K      K+ +SA +EWT+QETLLLLE LE++KDDWNKVSEHVG+RTQDECI+ FL+LPIEDPYLE DS   LGPLA+QP PFSQSGNP+MSTV+FLAS+VDPRVASAAAK+A++EFS++KEE+P  L++AHV K         KA+   G+                EE   +EA       DE      P       E       +  P + +  G+    EK   ++   P   P   KEP             SE E+K    R+ +  GN+ TAAAAA+A+AAVKAK+LA VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD+ERE LE QRQ L+ +RQ F  +QLK  E RA
Sbjct:  578 RTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE-DSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERD-IGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 946
The following BLAST results are available for this feature:
BLAST of TCONS_00022279-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMRC23.360e-8052.56SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN... [more]
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