TCONS_00022078-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022078-protein
Unique Name	TCONS_00022078-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	822

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022078-protein ID=TCONS_00022078-protein|Name=TCONS_00022078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp
SESSHNKKINMASSEEKRDGHNKKINMASSEEKRDEQKNQPQIENNIFGK
QNVKDYSQDVFKDVVKATQNGNAFASLLDEFPYWSSFPEFNEQCKEIGDK
ILNEISELFRHNAVQCGWTTTSRFVDTEERFERLVDGNDIMLESLGTFID
EANGVKKNEKPLVPLNAQSTPIVSSWNKQKNKNSGQSSFKLLLAKNIQRP
QLKWLDKIDNSNTPFTPYIKTKPNAIKPLEEDEMSTEPLSDAVDNFIKQA
RKRNASISAVRHPYEHEISEFEPSEDEIERKDAQMYKSLDETEFHFVETN
EQLTEMHKHLLQAHEVAIDLEHHSYRSFQGFVCLMQISTREKDFVVDTLA
LRXELYILNEVFTDPKILKVLHGADMDIGWLMRDFGLYIVNMFDTGQAAR
TLQEDRFSLAHLLKKHCDVNAQKQYQLADWRIRPLPEEMVRYAREDTHYL
LYIYDCMRNQLMDRGNEMKNLIRSVYSKSASICLSLYEKPRFFTDSHWMA
YQKYRGRLNQQQLECFRLLYEWRDKISREEDESYGYSLPNHMMFQIAENL
PKEPPGVIACCNPVPPLVKQHLIDVHRLVLKAREYDPAENLQVTSDTSRN
IRHEDSYDIDSRLDTGKTGFEIYSIIGPKIEQRIPALSAFEAMVKEHIEL
TEGKRKAKELLSILTSPFQQYLPNTGVPVKHPDQINKKWKEAITTKTTEN
PKIPTIEIESSSDDNVKLQSGNKKRKSDESEQEVQEVTIREMISGKRQKT
SDDEMTYEDTVKDSSEYVPFDYSKANMRKFAANKKKNSQTEKPTIIQEPN
KGKAMKTKVKNKSANQTMSFQR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012379	XLOC_012379	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022078	TCONS_00022078	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002562	3'-5'_exonuclease_dom
IPR002121	HRDC_dom
IPR012588	Exosome-assoc_fac_Rrp6_N
IPR012337	RNaseH-like_dom
IPR010997	HRDC-like

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006396	RNA processing
GO:0044237	cellular metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008408	3'-5' exonuclease activity
GO:0003676	nucleic acid binding
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0000176	nuclear exosome (RNase complex)

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005622	intracellular
cellular_component	GO:0000176	nuclear exosome (RNase complex)
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 294..462 e-value: 5.7E-47 score: 172.0
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 295..461 e-value: 2.5E-46 score: 157.5
IPR002121	HRDC domain	SMART	SM00341	hrdc7	coord: 509..589 e-value: 8.5E-13 score: 58.5
IPR002121	HRDC domain	PFAM	PF00570	HRDC	coord: 512..577 e-value: 1.3E-11 score: 44.2
IPR002121	HRDC domain	PROSITE	PS50967	HRDC	coord: 509..589 score: 14.587
IPR012588	Exosome-associated factor Rrp6, N-terminal	PFAM	PF08066	PMC2NT	coord: 65..154 e-value: 3.6E-12 score: 46.7
None	No IPR available	GENE3D	1.10.150.80		coord: 495..595 e-value: 9.6E-19 score: 66.6
None	No IPR available	CDD	cd06147	Rrp6p_like_exo	coord: 290..479 e-value: 4.14375E-117 score: 354.211
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 292..481 e-value: 9.8E-44 score: 148.6
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 197..491
IPR010997	HRDC-like	SUPERFAMILY	47819	HRDC-like	coord: 492..589

Blast

[Close]

BLAST of TCONS_00022078-protein vs. Swiss-Prot (Human)
Match: EXOSX (Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2)

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 318/851 (37.37%), Postives = 477/851 (56.05%), Query Frame = 0

Query:   49 GKQNVKDYSQDVFKDVVKATQNGNAFASLLDEFPYWSSFPEFNEQCKEIGDKILNEISELFRHNAVQCGWTTTSRFVDTEERFERLVDGNDIMLESLGTFIDEANGVKKNEKPLVPLNAQ-STPIVSSWNKQK---NKNSGQSSFKLLLAKNIQRPQLKWLDKIDNSNTPFTPYIKTKPNAIKPLEE---DEMSTEP--------LSDAVDNFIKQARKRNASISAVRHPYEHEISEFEPSEDEIERKDAQMYKSLDETEFHFVETNEQLTEMHKHLLQAHEVAIDLEHHSYRSFQGFVCLMQISTREKDFVVDTLALRXELYILNEVFTDPKILKVLHGADMDIGWLMRDFGLYIVNMFDTGQAARTLQEDRFSLAHLLKKHCDVNAQKQYQLADWRIRPLPEEMVRYAREDTHYLLYIYDCMRNQLMDRGNEMKNLIRSVYSKSASICLSLYEKPRFFTDSHWMAYQKYRGRLNQQQLECFRLLYEWRDKISREEDESYGYSLPNHMMFQIAENLPKEPPGVIACCNPVPPLVKQHLIDVHRLVLKAREYDPAENLQVTSDTSRNIRHEDSYDIDSRLD-----------TGKTGFEIYSIIGPKIEQRIPALSAFE---------AMVKEHI---------------ELTEGKRKAKELLSILTSPFQQYLPNTGVPVKHPDQINKKWKEAITTKTTENP---KIPTIEIESSSDDNVKLQSGNKKRKSDE-----SEQEVQEVTIREMI-----SGKRQKTSDDEMTYE---------------DTVKDSSEYVPFDYSKANMRKFAANKKKNSQTEKPTIIQEPNKGKAMKTKVKNKS-ANQTMSF 820
            G  +   + +     VV  T+         DE+ ++ SFP F   C+  GD++L  +S + +++  +      S+  + E++F+ LVD ND++LE +G  +DEA+GV KN++P++P   Q    +VSSWN++     K +   +F+LL AKNI RPQLK+ +KIDNSNTPF P I  KPNA KPL +    E    P        +  A+ +FI Q R +        HPY++E++ F P++  +++   Q+Y+ ++ET  HF+ + ++L E+++ LL   E A+DLEHHSYRSF G  CLMQISTR +DF++DTL LR ++YILNE  TDP I+KV HGAD DI WL +DFGLY+VNMFDT QAAR L   R SL HLLK +C+V++ KQYQLADWRIRPLPEEM+ YAR+DTHYLLYIYD MR ++ +RGN     ++ V+ +S  ICL  + KP F  +S+   Y+K +  LN QQL  F+LL+ WRDK +R EDESYGY LPNHMM +IAE LPKEP G+IACCNPVPPLV+Q + ++H L+ +ARE        + S+ +  ++         RL+               G+ I    G    Q+  +L   E          ++   +                LT  ++KA+ ++    +PF+ +LP+ G    H   +++  K   +TK  E     K+  ++++  S + VK ++  +    ++          Q +++R+ +     + KR++ + D  T E               D      E+ P+DYS+++ + FA N K    ++     Q P+  K +  K   +S  N++MSF
Sbjct:   28 GFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMP-----LLKSEVAAGVKKSGPLPSAERLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITLFNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLG----HRAPVSQAAKFDPSTKIYEISNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKRERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQFDPNKQTPSGKKCIAAKKIKQSVGNKSMSF 869

The following BLAST results are available for this feature:

BLAST of TCONS_00022078-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022078-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EXOSX	0.000e+0	37.37	Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE...	[more]

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TCONS_00022078-protein (polypeptide) - C. hemisphaerica