TCONS_00019987-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019987-protein
Unique NameTCONS_00019987-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019987-protein ID=TCONS_00019987-protein|Name=TCONS_00019987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
ITVVIVEDNNLSEKMLMKQLSPRSLKRLKENGASNKQNQQKEQKTYKVVV
IGDCEVGKSALTMQYVSNVFLDFHDPTIEDFFQTQTVVDGESGIVDILDT
AGQDGSQTTMNEQYLRQGGQAYIGVYSITSLPSYNRLRKQIQTLKRLRAN
ERIPLIIVANKLDLFNDRVVSTMDGIALAREFDCPFYEASAANRINVEDA
FNGLIRQVRKMENDIMFECENLKKPKLKRFRKYVCKKIQSHIVI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011228XLOC_011228Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019987TCONS_00019987Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 86..108
score: 35.16
coord: 186..208
score: 38.13
coord: 151..164
score: 40.8
coord: 69..85
score: 30.8
coord: 46..67
score: 44.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 46..211
e-value: 5.5E-22
score: 89.0
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 43..211
e-value: 2.9E-68
score: 242.8
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 48..211
e-value: 3.1E-7
score: -25.4
NoneNo IPR availableGENE3D3.30.70.1390coord: 57..111
e-value: 5.0E-15
score: 54.8
NoneNo IPR availableGENE3D3.40.50.300coord: 17..56
e-value: 0.17
score: 10.6
NoneNo IPR availableGENE3D3.40.50.300coord: 112..209
e-value: 1.3E-21
score: 76.0
NoneNo IPR availableCDDcd00876Rascoord: 47..208
e-value: 1.43365E-62
score: 194.281
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 47..209
e-value: 1.9E-39
score: 134.7
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 44..202
e-value: 1.2E-21
score: 75.2
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 38..244
score: 27.098
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 40..230

Blast
[Close]
BLAST of TCONS_00019987-protein vs. Swiss-Prot (Human)
Match: RIT2 (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.685e-52
Identity = 87/186 (46.77%), Postives = 127/186 (68.28%), Query Frame = 0 
Query:   44 KTYKVVVIGDCEVGKSALTMQYVSNVFLDFHDPTIEDFFQTQTVVDGESGIVDILDTAGQDGSQTTMNEQYLRQGGQAYIGVYSITSLPSYNRLRKQIQTLKRLRANERIPLIIVANKLDLFNDRVVSTMDGIALAREFDCPFYEASAANRINVEDAFNGLIRQVRKMENDIMFECENLKKPKLKR 229
            + YKVV++G   VGKSA+TMQ++S+ F D+HDPTIED ++TQ  +D E   +DILDTAGQ    T M EQY+R GG+ +I  YS+T   S+    K  + + ++R    IPL++V NK+DL   R VST +G++LA+E++C F+E SAA R  ++DAF+GL+R++RK E+       +L + KLKR
Sbjct:   19 REYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQ-AEFTAMREQYMR-GGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKKES-----MPSLMEKKLKR 197
The following BLAST results are available for this feature:
BLAST of TCONS_00019987-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIT22.685e-5246.77GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
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