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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00019680-protein ID=TCONS_00019680-protein|Name=TCONS_00019680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=948bp
PSQKKVINDFVITTILTSSKTRKKMAEFEVYLQGGSPWGFRLQGGKEFRL
PLKISKVEPGGKAAIGGIRVGDHVAEINENSTDGMYHTEALTTVKRAQYS
LSLVLKRPEESEDPTGHTIQSVSLAPEDNQTRVSLTIGTKSAPSSPRSNR
RTYNRSFDSTDASTEPKRNANVPTGQAYMQKLVGSLNDLDDDVDDRMGDL
PPQDRERSKTLPKSYGKNRDKNGDTSKSLPRNSSTSSEPPNKAPHWYKQM
YKEMHTSMEGESHLSKLLSSDAKRGAFRKYDGATQSGANYRSMSPEERRT
AFEDNSLSSSDAPRRLQGGGRAAATHHHRKSLPNIHASNFNFMQPSNYHT
PTPSATPPSSSTTLKTTSSNPPSNGVTMRVNGRKTAIVKQRSEDVLSKPS
STSTAATAENRKSINSDWYKALQKGGEIPEAGLATGIKTSKSASNISLGR
SQTDGPPKKTGGISGHMQASQYHHEKSNSDTYVAPQPNTNIKYNAPVDFL
ELRKRELKNLELEKEREEIRQARERERLEEEERLRKQKENDRMIIAREQQ
NLEPVLTSPGPDTKQQRSPIQKTPPRKEPEPLLEPPKLPEFGRAKYSFHP
QGPGELEFRKGDTVRIIQSIDENWIEGEYEGNIGIFPVSYVELIQEAPPS
TPRQATATPSTPKENNTPPKQNTDRNNNKKSPPQHKEASPPTTNGYHDDR
PVEEEPIIAQQREEIVESAPDLSEEQALAEPQQFNLEEGLGKARYTFRAE
TESELSFRKGDMITILKQVDDNWFEGELDGQIGIFPSNYIEVLKEPMVVE
LEPVSDKKSVSSSKQDVDFEQIFNDVLSEPTSPKSKQQVVAEEERMNHVN
DTRNHNGYHHHHDDSYSEPEPREVEEEQLAGTELEDLVGKGEPHKAVYTY
KPTNEDEVELNIGDIVHVLEKCDDGWFIGTSGRTGVFGTFPGNYVTPV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 497..548 |
| None | No IPR available | PRINTS | PR00499 | P67PHOX | coord: 761..777
score: 44.12
coord: 741..761
score: 27.38
coord: 631..650
score: 26.25
coord: 605..624
score: 28.75
coord: 777..790
score: 41.07 |
| None | No IPR available | GENE3D | 2.30.30.40 | | coord: 765..897
e-value: 3.3E-19
score: 67.7 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 16..111
e-value: 9.4E-20
score: 70.0 |
| None | No IPR available | GENE3D | 2.30.30.40 | | coord: 898..948
e-value: 7.8E-16
score: 57.2 |
| None | No IPR available | GENE3D | 2.30.30.40 | | coord: 463..638
e-value: 7.6E-19
score: 67.1 |
| None | No IPR available | GENE3D | 2.30.30.40 | | coord: 639..764
e-value: 7.0E-15
score: 54.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 278..409 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 517..610 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 105..175 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 850..872 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 188..244 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 443..488 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 647..700 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 29..106
e-value: 1.21089E-16
score: 75.681 |
| None | No IPR available | CDD | cd11780 | SH3_Sorbs_3 | coord: 893..947
e-value: 8.86005E-31
score: 115.476 |
| IPR001452 | SH3 domain | PRINTS | PR00452 | SH3DOMAIN | coord: 781..793
score: 42.02
coord: 753..768
score: 39.76 |
| IPR001452 | SH3 domain | SMART | SM00326 | SH3_2 | coord: 590..645
e-value: 3.8E-19
score: 79.6
coord: 739..794
e-value: 2.0E-21
score: 87.2
coord: 892..948
e-value: 1.9E-14
score: 64.0 |
| IPR001452 | SH3 domain | PFAM | PF00018 | SH3_1 | coord: 742..787
e-value: 1.2E-13
score: 50.4 |
| IPR001452 | SH3 domain | PFAM | PF14604 | SH3_9 | coord: 896..946
e-value: 1.6E-13
score: 50.2
coord: 594..642
e-value: 9.6E-12
score: 44.5 |
| IPR001452 | SH3 domain | PROSITE | PS50002 | SH3 | coord: 889..948
score: 14.53 |
| IPR001452 | SH3 domain | PROSITE | PS50002 | SH3 | coord: 587..646
score: 14.465 |
| IPR001452 | SH3 domain | PROSITE | PS50002 | SH3 | coord: 736..795
score: 16.446 |
| IPR001452 | SH3 domain | SUPERFAMILY | 50044 | SH3-domain | coord: 738..799 |
| IPR001452 | SH3 domain | SUPERFAMILY | 50044 | SH3-domain | coord: 581..664 |
| IPR001452 | SH3 domain | SUPERFAMILY | 50044 | SH3-domain | coord: 891..948 |
| IPR001478 | PDZ domain | SMART | SM00228 | pdz_new | coord: 36..109
e-value: 1.8E-13
score: 60.8 |
| IPR001478 | PDZ domain | PFAM | PF00595 | PDZ | coord: 32..105
e-value: 4.2E-10
score: 39.7 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 25..109
score: 15.662 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 26..111 |
Blast
BLAST of TCONS_00019680-protein vs. Swiss-Prot (Human)
Match: VINEX (Vinexin OS=Homo sapiens GN=SORBS3 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 9.529e-32 Identity = 80/233 (34.33%), Postives = 125/233 (53.65%), Query Frame = 0
Query: 736 LEEGLGKARYTFRAETESELSFRKGDMITILKQVDDNWFEGELDG--QIGIFPSNYIEVLKEPMVVELE-----PVSDKKSVS--SSKQDVDFEQIFNDV----LSEPTSPKSK------QQVVAEEERMNHVNDTRNHN-GYHHHHDDSYSEPEPREVEEEQLAGTELEDLVGKGEPHKAVYTYKPTNEDEVELNIGDIVHVLEKCDDGWFIGTSGRTGVFGTFPGNYVTPV 948
LE G A+YTF+ + E ELSFRKG+ I ++++V++NW+EG + G + GIFP++Y++V +EP + + P S + + + S++ + + L TSP+ Q+ + + + +H+ G H D S P ++ P++A+Y Y+P NEDE+EL GD V V+++CDDGWF+G S RT FGTFPGNYV PV
Sbjct: 454 LEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDGPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQTSPRRTGFSFPTQEPRPQTQNLGTPGPALSHSRGPSHPLDLGTSSPNTSQIH---------------WTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 671
The following BLAST results are available for this feature:
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