TCONS_00019383-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019383-protein
Unique NameTCONS_00019383-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019383-protein ID=TCONS_00019383-protein|Name=TCONS_00019383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
MAGESEEKLNQKDEEQKIELTTMTIKNEVIDDVSPTGYPRPESASPSGYP
RHSSTSYRRYPSENQTAESRSSLEDWDEEPESPSRFPASKVTLINEEPEQ
RGQHYYESYQTRQSPDPRRRIDQELNLDMDSQSPKSPGFYSNETRRSNPD
LSKYDRQSSSQRSSGSPHESIEHSTIKRQFSRPDESLKRNTIVEPPPVRE
HRFEGAYKTTGGDAAEKVWLYEENIKKLYNLDKNPQRQIFLDEFFSYRRT
HGLYCKIPVIARKPLDVFLLYSIVQKYGGFEQTMKNRMWSQIARELELPR
TMTSGAFTLKLKYIRLLYQFECYKVKKQVNKSILFNEASILPEQMSQMND
HVPQHLSIHQQQNPAYRQHQQTSKSSSNDHRRGNDDYYRERRDEHSRENM
MRVKQRDDQFNERPTFSKTDRNRYSPHRDTGGSSPSSNNDIVLRSSTPPS
SDRNHRDHHRRLPPSIHSRKRGVHEELDDDTDTGTSGSQPKSPRLDTQSV
SRFSVDVVESSRDSIVLKVRMNNDVFEGVLECTQRGDIRDYAAEQKM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010894XLOC_010894Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019383TCONS_00019383Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 235..326
e-value: 1.0E-19
score: 81.5
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 237..321
e-value: 9.2E-16
score: 58.2
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 234..325
score: 25.533
IPR001606ARID DNA-binding domainSUPERFAMILY46774ARID-likecoord: 219..333
NoneNo IPR availableSMARTSM01014ARID_2coord: 231..321
e-value: 5.8E-25
score: 98.9
NoneNo IPR availableGENE3D1.10.150.60coord: 220..380
e-value: 2.4E-25
score: 88.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..500
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..206

Blast
[Close]
BLAST of TCONS_00019383-protein vs. Swiss-Prot (Human)
Match: ARI3A (AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.877e-26
Identity = 45/107 (42.06%), Postives = 74/107 (69.16%), Query Frame = 0 
Query:  219 WLYEENIKKLYNLDKNPQRQIFLDEFFSYRRTHGLYC-KIPVIARKPLDVFLLYSIVQKYGGFEQTMKNRMWSQIARELELPRTMTSGAFTLKLKYIRLLYQFECYK 324
            W YEE  K+LY LD +P+R+ FLD+ FS+ +  G    +IP++A++ LD+F+LY +V + GG  + +  ++W +I + L LP ++TS AFTL+ +Y++ LY +EC K
Sbjct:  223 WTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 329
The following BLAST results are available for this feature:
BLAST of TCONS_00019383-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARI3A3.877e-2642.06AT-rich interactive domain-containing protein 3A O... [more]
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