TCONS_00019191-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019191-protein
Unique NameTCONS_00019191-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019191-protein ID=TCONS_00019191-protein|Name=TCONS_00019191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=796bp
MNVEITESISLPISKSSFLPLDSSNGYAAFSTPLVKGIQLKRISNAIDFQ
DLEEQSDNKDSNKEVSFKLNNVHPSGVQFVCFGNQNGPLVFASACSDEVN
IWNLDLTGRTKAPEPLTIAENLGCVSCMAFSKDDQHLAICISNEIWVINT
LNSELVVEFSASQSFIFLVGFCLTIEDMLISIAEDRTYCIWDVGEKEQLY
QSTIISSFQFQSLAVHPLESYFATGSEDGMLRVFDMTLHSSLHEVNILQL
LNKDFDNITECSVLSLKYWKRKASFAQSKLAEELYLAIGCHLGFLIFNAN
SMEVIYTFLFDYEIHDNGLSNQYKAFQNATQIDFSAPIEQNRLTVGVLSP
SNKLYFFLVEPDLEDLNLALELLAVEPLQKDSPLKNILVPKPIPDAKPKI
AKAKSSNRPTKQKVDKMNQPVVFKKKVASSGYTASKPRNEMFKPQTNASK
TKKSAPTGKTSKTDRKNPVGPWGLKTEPRSLQEDYPKDSEPTIHLIENKQ
LTEKPIPINDMSFSDTGKSLACALSDNSLLLCKGKSLNTHSTFQGHTGVL
NSCSIGHQNGYLATASADSTVKLWSVAQTELLMTMTHLKHNFKQDNNVKN
EIKRYQNNCRYKLVKDFEVEDTQNITTFSAINTFYSYKVICACSNRSLAI
FDMNKGEEVQTIKDAHTRPVHSVSQIQGSTFIGLPSESYELFVTSAPHDG
VKLWDTRTYRSVRKYEGHVNRSQKVGLAVSPCAKYIAVGSEDKSVYIYDI
RSNSYLHSLPGHKDNVSALAYHPQKPTLACGTLSGSFRLYSDAEKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010772XLOC_010772Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019191TCONS_00019191Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 62..103
e-value: 3.0
score: 14.0
coord: 655..705
e-value: 5.4
score: 12.4
coord: 488..533
e-value: 31.0
score: 7.6
coord: 152..192
e-value: 12.0
score: 10.2
coord: 610..652
e-value: 190.0
score: 2.6
coord: 536..575
e-value: 7.2E-7
score: 38.8
coord: 112..149
e-value: 62.0
score: 5.7
coord: 201..235
e-value: 0.095
score: 21.8
coord: 708..749
e-value: 0.0032
score: 26.7
coord: 752..791
e-value: 6.0E-5
score: 32.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 541..575
e-value: 0.0018
score: 19.0
coord: 755..790
e-value: 0.0039
score: 17.9
coord: 711..749
e-value: 4.0E-4
score: 21.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 727..758
score: 8.503
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 759..791
score: 8.503
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 543..584
score: 13.215
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 22..189
e-value: 2.9E-13
score: 49.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 602..791
e-value: 2.9E-30
score: 105.0
NoneNo IPR availableGENE3D1.10.10.670coord: 190..262
e-value: 1.1E-8
score: 34.4
NoneNo IPR availableGENE3D2.80.10.50coord: 475..601
e-value: 1.3E-19
score: 69.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 398..487
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 70..244
score: 10.311
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 501..796
score: 19.248
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 611..791
coord: 212..272
coord: 120..167
coord: 508..578

Blast
[Close]
BLAST of TCONS_00019191-protein vs. Swiss-Prot (Human)
Match: WDR27 (WD repeat-containing protein 27 OS=Homo sapiens GN=WDR27 PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 7.559e-65
Identity = 137/425 (32.24%), Postives = 211/425 (49.65%), Query Frame = 0 
Query:  396 AKPKIAKAKSSNRPTKQKVDKMNQPVVFKKKVASSGYTASKPRNEMFKPQTNASKTKKSAPTGKTSKTDRKNPVGPWGLKTEPRSLQEDYPKDSEPTIHLIENKQLTEKPI--PINDMSFSDTGKSLACALSDNSLLLCKGKSLNTHSTFQGHTGVLNSCSIGHQNGYLATASADSTVKLWSVAQTELLMTMTHLKHNFKQD----------------------------NNVKNEIKRYQNNCRYKLVKDFEVEDTQNITTFSAINTFYSYKVICACSNRSLAIFDMNKGEEVQTIKDAHTRPVHSVSQIQGSTFIGLPSESYELFVTSAPHDGVKLWDTRTYRSVRKYEGHVNRSQKVGLAVSPCAKYIAVGSEDKSVYIYDIRSNSYLHSLPGHKDNVSALAYHPQKPTLACGTLSGSFRLY 790
            AK K  KA S  R   + V K +Q +VF  KV SSGY AS P   MF P+TN     K +   ++S      PV    + T+P                     Q+   P    +  + +S  G+ LAC L+++ LL+       T + F GH G +N+        +L +A+ D T+++WS    EL + +   K  F +                             +  K+EIKRY+   + KL+         ++T+ SA+N FYS+ V+ A  NR++ +FD+N G     I +AH+RPVH + Q +GS+F     ++Y LF+T+A  DG++LWD RT R  R +EGH  R    G+A SPC ++ A G+ED+  Y+Y++ S+++ H L GH D V+ +A++P  P LA  TL G  +L+
Sbjct:  424 AKEKSTKAASEQRRAARNVMK-DQRLVFHSKVRSSGY-ASAPHVTMFSPKTNIKSEGKGSSRSRSSCAREAYPV-ECAVPTKP-------------------GPQVAAAPTCTRVCCIQYSGDGQWLACGLANHLLLVFDASLTGTPAVFSGHDGAVNAVCWSQDRRWLLSAARDGTLRMWSARGAELALLLG--KDMFSKPIQSAQFYYIDAFILLSSGPEFQLLRYHIDTCKDEIKRYKQKSKSKLICRLSTTGAVDMTSLSAVNDFYSHIVLAAGRNRTVEVFDLNAGCSAAVIAEAHSRPVHQICQNKGSSFTTQQPQAYNLFLTTAIGDGMRLWDLRTLRCERHFEGHPTRGYPCGIAFSPCGRFAACGAEDRHAYVYEMGSSTFSHRLAGHTDTVTGVAFNPSAPQLATATLDGKLQLF 824

HSP 2 Score: 83.9593 bits (206), Expect = 1.352e-16
Identity = 51/169 (30.18%), Postives = 79/169 (46.75%), Query Frame = 0 
Query:   73 HPSGVQFVCFGNQNGPLVFASACSDEVNIWNLDLTGRTKA-----PEPLTIAENLGCVSCMAFSKDDQHLAICISNEIWVINTLNSELVVEFSASQSFIFLVGFCLTIEDMLISIAEDRTYCIWDVGEKEQLYQSTIISSFQFQSLAVHPLESYFATGSEDGMLRVFDM 236
            H   +  + FGN+  PL+  SA  D V +WNLD   R K      P    +   LG V C+  S DD  +A+C  N+I++++     +  E       +  V FC      LIS +EDR + +WD      +Y S+++S++   SL +        TG  DG L +F +
Sbjct:   70 HHQPITAMAFGNKVNPLLICSASLDYVIMWNLD-ECREKVLQGLVPRGTVMGSLLGKVLCLQLSLDDHVVAVCAGNKIFMLDIETQAVRAELQGHLGPVTAVEFCPWRAGTLISASEDRGFKVWDHCTGSLIYSSSVLSAYPLLSLFIDAESRQLVTGCADGQLWIFSL 237
The following BLAST results are available for this feature:
BLAST of TCONS_00019191-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR277.559e-6532.24WD repeat-containing protein 27 OS=Homo sapiens GN... [more]
back to top