TCONS_00018994-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018994-protein
Unique NameTCONS_00018994-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018994-protein ID=TCONS_00018994-protein|Name=TCONS_00018994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
VRNFAHVKDPTQDTRSTSNMASPSESGNWGEDGTFYDNFESGSGSGSGRS
DRDFDNFGGGYGGGRRGRGGRGGRDRGDRGGRGGGGYNNRGGGGGGYYQG
GGGDRDAPIPEEPPFTAYVGNLPYQCVQGDVDQIFAELKVRNIKLIRDRE
TDKFKGFAYVEFDDKESLIKALEFDQAQFGDRNLKVNVSRNNRRGGGRGG
RGGGDDRGGRGGRGRGSGGGFGGGFGGGDRYNNEFPRDGGFGGGRRGGRD
GGRDGGRGDGGDFHRNDRRGPPPSMEEFSSGDPDDLKNRPRIKLAPRTVR
DPVNDVADKTQQLSIFGGAKPRDEVKYEQKVYEKQADEKLKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010647XLOC_010647Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018994TCONS_00018994Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 116..187
e-value: 5.7E-18
score: 75.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 118..185
e-value: 1.7E-14
score: 53.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 115..191
score: 15.085
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 106..222
NoneNo IPR availableGENE3D3.30.70.330coord: 99..222
e-value: 2.2E-22
score: 78.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..114

Blast
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BLAST of TCONS_00018994-protein vs. Swiss-Prot (Human)
Match: IF4H (Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5)

HSP 1 Score: 155.992 bits (393), Expect = 9.362e-46
Identity = 102/226 (45.13%), Postives = 141/226 (62.39%), Query Frame = 0 
Query:  109 IPEEPPFTAYVGNLPYQCVQGDVDQIFAELKVRNIKLIRDRETDKFKGFAYVEFDDKESLIKALEFDQAQFGDRNLKVNVS--RNNRRGGGRGGRGGGDDRGGRGGRGRGSGGGFGGGFGGGDRYNNEFPRDGGFGGGRRGGRDGGRDGGRGDGGDFHRNDRRGPPP--SMEEFSSGDPDDLKNRPRIKLAPRTVRDPVNDVADKTQQLSIFGGAKPRDEVKYEQK 330
            +P EPP+TAYVGNLP+  VQGD+D IF +L +R+++L+RD++TDKFKGF YVEFD+ +SL +AL +D A  GDR+L+V+++  R   +GG    +GG DD      RG GS     GG+   D +N+ F  D  F GGR G R G R  G   G  F    R GPP   S  +F     ++   RPR++L PRTV  P+N VA+     +IFGGA+PR+EV  +++
Sbjct:   36 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD------RGMGSSRESRGGWDSRDDFNSGFRDD--FLGGRGGSRPGDRRTGPPMGSRF----RDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNS--AIFGGARPREEVVQKEQ 247
The following BLAST results are available for this feature:
BLAST of TCONS_00018994-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF4H9.362e-4645.13Eukaryotic translation initiation factor 4H OS=Hom... [more]
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