TCONS_00018126-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018126-protein
Unique NameTCONS_00018126-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018126-protein ID=TCONS_00018126-protein|Name=TCONS_00018126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MESPKRNRSRSRSPIQRSRSPRRDDRRGRDRRSGGASIKGTKGKEYRVYV
NNLNFQVKWMNLKDLMKKVGPVSHVEIFTGQDGKSRGCGVVEFEHADDAA
KAIKEYDGIQHEGRKIHVRQDQVNDSHYEEQLRTQKEKTRRDRDREMMGR
GGPMQPMGGPGGLLGALGNLGGGGIGNLSAGLIQMLNAKNGDPINATVFI
SNLDYNIRWQELKDQLRRAGNCKTCTITTEEETKKSKGYGQAVFESPMEA
LNAIAMFNGFEMGRDRRAIVIRLDRQAPLNQLLQQIGITEITQNTLVQFQ
SMALLSQLGGLQGLSALTGGLTGGLGGLAGALGGAAGGLGGAAGGLGSAA
QNLQNYQNQGNLGAIGSGQSSLSANNQQGLGALSSLGLGNLGGLGNLLTQ
SQQGGSSMNSALSSLGNNFGASSNSQSQYQQLSSGSNIGASNYTAGQQLS
NYSITGGRGSSGGFATQDSRRSSDIGSGYGYNTGSSSGGSVAKTRVFVRN
LPFSLKWQDLKDRFRDAGRIIRADIKQDDNNRSKGCGTVTFETADEAVKA
ISIFNGMRIDGREIEVRMDRVAGDR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010177XLOC_010177Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018126TCONS_00018126Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 495..567
e-value: 5.0E-23
score: 92.5
coord: 197..271
e-value: 1.2E-12
score: 58.1
coord: 47..119
e-value: 1.0E-20
score: 84.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 198..263
e-value: 1.0E-11
score: 44.4
coord: 496..564
e-value: 1.4E-18
score: 66.4
coord: 48..117
e-value: 1.8E-18
score: 66.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 494..571
score: 17.063
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 46..123
score: 15.392
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 196..276
score: 12.492
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 475..570
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 193..265
coord: 46..133
NoneNo IPR availableGENE3D3.30.70.330coord: 399..575
e-value: 7.8E-23
score: 80.5
NoneNo IPR availableGENE3D3.30.70.330coord: 135..285
e-value: 6.6E-17
score: 61.2
NoneNo IPR availableGENE3D3.30.70.330coord: 40..134
e-value: 7.4E-23
score: 80.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 460..489
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableCDDcd12387RRM3_hnRNPM_likecoord: 496..567
e-value: 5.61706E-34
score: 122.375

Blast
[Close]
BLAST of TCONS_00018126-protein vs. Swiss-Prot (Human)
Match: HNRPM (Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 3.171e-26
Identity = 82/268 (30.60%), Postives = 130/268 (48.51%), Query Frame = 0 
Query:   14 PIQRSRSPRRDDRRGRDRRSGGASIKGTKGKEYRVYVNNLNFQVKWMNLKDLMK-KVGPVSHVEIFTGQDGKSRGCGVVEFEHADDAAKAIKEYDGIQHEGRKIHVRQDQVNDSHYEEQLRTQKEKTRRDRDREMMGRGGPMQPMGGPGGLLGALGNLGGGGIGNLSAGLIQMLNAKNGDPINATVFISNLDYNIRWQELKDQLRRAGNCKTCTITTEEETKKSKGYGQAVFESPMEALNAIAMFNG---FEMGRDRRAIVIRLDRQA 277
            P Q  +   ++ +RG +R    A+      K YR ++ N+ F VKW +LKDL+K KVG V++VE+    +GKSRGC VVEF+  +   KA +  +     GR + V++D  +  H    ++     T              + P          L N       N+   +I  L A     + +TVF++NLDY + W++LK+    AG      I  E++  KS+G G   FE  +EA+ AI+MFNG   F+     R + +++D +A
Sbjct:   43 PAQNEKRKEKNIKRGGNRFEPYAN----PTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDP-DGEHARRAMQKVMATTGGMGMGPGGPGMITIPP--------SILNN------PNIPNEIIHALQAGR---LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-----RPMHVKMDERA 282

HSP 2 Score: 93.2041 bits (230), Expect = 7.777e-20
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0 
Query:  494 TRVFVRNLPFSLKWQDLKDRFRDAGRIIRADIKQDDNNRSKGCGTVTFETADEAVKAISIFNGMRIDGREIEVRMDRVA 572
             ++FVRNLPF   W+ LKD+F + G ++ ADIK + N +SKGCG V FE+ + A +A  + NGM++ GREI+VR+DR A
Sbjct:  653 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 730
The following BLAST results are available for this feature:
BLAST of TCONS_00018126-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPM3.171e-2630.60Heterogeneous nuclear ribonucleoprotein M OS=Homo ... [more]
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