TCONS_00017944-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017944-protein
Unique NameTCONS_00017944-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017944-protein ID=TCONS_00017944-protein|Name=TCONS_00017944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MPGVTVKDVCPQKFVVAFAAHLKKSNKMKVPEFVEIVKTSKAKEIGPVDP
DWYYVRAAAVARHVYLRPNTGVGALRRVYGGAKNNGTRPSHFVKGSASVA
RKVLQSLEGLKMVTTDENGGRTLTSTGRRDMDRIACQVVAA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010057XLOC_010057Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017944TCONS_00017944Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001266Ribosomal_S19e
IPR018277Ribosomal_S19e_CS
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 5..141
e-value: 5.1E-84
score: 295.1
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 5..139
e-value: 6.4E-57
score: 191.0
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 5..119
e-value: 1.0E-28
score: 311.0
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 89..108
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 4..139

Blast
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BLAST of TCONS_00017944-protein vs. Swiss-Prot (Human)
Match: RS19 (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 2.127e-62
Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 0 
Query:    1 MPGVTVKDVCPQKFVVAFAAHLKKSNKMKVPEFVEIVKTSKAKEIGPVDPDWYYVRAAAVARHVYLRPNTGVGALRRVYGGAKNNGTRPSHFVKGSASVARKVLQSLEGLKMVTTDENGGRTLTSTGRRDMDRIACQVVAA 141
            MPGVTVKDV  Q+FV A AA LKKS K+KVPE+V+ VK +K KE+ P D +W+Y RAA+ ARH+YLR   GVG++ ++YGG + NG  PSHF +GS SVAR+VLQ+LEGLKMV  D++GGR LT  G+RD+DRIA QV AA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141
The following BLAST results are available for this feature:
BLAST of TCONS_00017944-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS192.127e-6262.4140S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
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