TCONS_00016757-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016757-protein
Unique NameTCONS_00016757-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016757-protein ID=TCONS_00016757-protein|Name=TCONS_00016757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp
MPNKAAGPDFFKVKDLKAANLSSICMIFNYCLVTGTQPVQWKKNRTTLIP
KKPDGLYDASNWRLITISSVIARLLHRILAKRLTQALHLNPRQKAFLPMD
GIAQNTLILDSVIQKARKSRSTLSIVGIDLSKAFDSVSHHSLTRALRRHK
VEEQMIDYIINTYTGATTNISCGPVKLDRIRLLRGVKQGDPLSPILFNLV
LDELFDLLPPWIGAKISDSIANALAFADDIILLAESHAGMNRLIEILADF
FRKRSMSVNAKKCFSFRFLLSKKDRVIVVSRERSYSINGKPIPSNTYDSP
FKYLGIKYDPRGKLKPSLTEFESMLGRVKGSPLKPQQKLTLLRDNVIPKF
THQLVLGRVTKGLLQSFDLAIRKTIKDITRLPSDTPTXKPQQKLTLLRDN
VIPKFTHQLVLGRVTKGLLQSFDLAIRKTIKDITRLPSDTPTMYFHAPIS
TGGLGFGKFEETIPRYTLKRLRNLENSTDLATRDLANSTYVHDLRQKLLA
MINKHTVEDALNYTKNQRIGNLYDSIDGSHLRECLSNPNGSTRLNYAPRH
VTGKSYIRLIQLRINRLPTLENCNRGRANDKACRHCQLYQETVNHILSRC
PRTRALRIRRHDSIAKLLQIACEAANLRVLYEHHIRINNQQLHKPDLIVV
LGLRYYNRRFHRHRQNANTW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009370XLOC_009370Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016757TCONS_00016757Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 97..307
e-value: 2.5E-24
score: 85.4
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 43..307
e-value: 5.86264E-50
score: 172.861
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 3..268
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 49..307
e-value: 3.6E-41
score: 141.0
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 30..308
score: 26.259

Blast
[Close]
BLAST of TCONS_00016757-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.127e-17
Identity = 87/367 (23.71%), Postives = 161/367 (43.87%), Query Frame = 0 
Query:    4 KAAGPDFFKV---KDLKAANLSSICMIFNYCLVTGTQPVQWKKNRTTLIPKKPDGLYDASNWRLITISSVIARLLHRILAKRLTQALH--LNPRQKAFLP-MDGIAQNTLILDSVIQKARKSRSTLSIVGIDLSKAFDSVSHHSLTRALRRHKVEEQMIDYIINTYTGATTNISCGPVKLDRIRLLRGVKQGDPLSPILFNLVLDELFDLL---PPWIGAKISDSIANALAFADDIILLAESH-AGMNRLIEILADFFRKRSMSVNAKKCFSFRFLLSKKDRVIVVSRERSYSINGKPIPSNTYDSPFKYLGIKYDP------RGKLKPSLTEFESMLGRVKGSPLKPQQKLTLLRDNVIPKFTHQL 354
            K+ GPD F     +  K   +  +  +F      G  P  + +    LIPK         N+R I++ ++ A++L++ILA R+ Q +   ++  Q  F+P M G       ++ +    R       I+ ID  KAFD +    + + L +  ++   +  I   Y   T NI     KL+   L  G +QG PLSP+LFN+VL+ L   +       G ++         FADD+I+  E+       L++++++F +     +N +K  +F +  +++    ++  E  ++I  K I         KYLGI+         +   KP L E +    + K  P     ++ +++  ++PK  ++ 
Sbjct:  469 KSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMG-ELPFTIASKRI---------KYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRF 825
The following BLAST results are available for this feature:
BLAST of TCONS_00016757-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF21.127e-1723.71LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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