TCONS_00015214-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015214-protein
Unique Name	TCONS_00015214-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	317

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015214-protein ID=TCONS_00015214-protein|Name=TCONS_00015214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MADSDEEKHEVIERKQRTRDLSLIKNKIRRNELYREEKQLKSKEKKKERA
KRKRERQEAGEDYEPPKRAQKTLDNMRVKDNTMVEGEDEEVLQDAMTDEF
ASTFTGEKIPKVLFTTSTRPKCHETMMFIKDLLSVIPNSEYKYRKGVDFK
EVVKQAKEKDYTSIVVVNEDQKKANALVVSHLPDGPTLHFKLSSSKRSWK
IKNHGKASSHRPELVLNNFNTRLGHTVGRSLASIFPYNPQFQGRRVVTFH
NQRDFIFFRQHRYIFKNKKKVGLQEIGPRFTLKLRSIQKGTFDSKFGEYE
WIHKRHEMDSSRRKFHL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008508	XLOC_008508	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015214	TCONS_00015214	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007109	Brix
IPR004154	Anticodon-bd

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..60
None	No IPR available	GENE3D	3.40.50.10480		coord: 109..284 e-value: 6.6E-52 score: 175.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 113..287 e-value: 1.5E-53 score: 193.9
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 123..285 e-value: 1.1E-29 score: 103.8
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 111..293 score: 38.614
IPR004154	Anticodon-binding	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 110..290

Blast

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BLAST of TCONS_00015214-protein vs. Swiss-Prot (Human)
Match: RPF1 (Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.851e-113
Identity = 169/298 (56.71%), Postives = 219/298 (73.49%), Query Frame = 0

Query:   21 LSLIKNKIRRNELYREEKQLKSKEKKKERAKRKRERQEAGEDYEPPKRAQKTLDNMRVKDNTMVEGEDEEVLQDAMTDEFASTFTGEKIPKVLFTTSTRPKCHETMMFIKDLLSVIPNSEYKYRKGVDFKEVVKQAKEKDYTSIVVVNEDQKKANALVVSHLPDGPTLHFKLSSSKRSWKIKNHGK-ASSHRPELVLNNFNTRLGHTVGRSLASIFPYNPQFQGRRVVTFHNQRDFIFFRQHRYIFKNKKKVGLQEIGPRFTLKLRSIQKGTFDSKFGEYEWIHKRHEMDSSRRKFHL 317
            +S IKNK RR+ ++   KQ + KEK   + K K+ER+  G D  PPK   KT+DN RV D T V+  DEEV  D  TDEFAS F  +  PK+L TTS RP    T+   + L +VIPNS   YR+G+  K+++ Q   +D+T ++V+NED+K  N L++SHLP+GPT HFK+SS +   +IK  GK  + H PE++LNNF TRLGH++GR  AS+FP+NPQF GR+V TFHNQRD+IFFR HRYIF+++KKVG+QE+GPRFTLKLRS+QKGTFDSK+GEYEW+HK  EMD+SRRKFHL
Sbjct:   54 ISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALG-DKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHG-RTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349

The following BLAST results are available for this feature:

BLAST of TCONS_00015214-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015214-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPF1	4.851e-113	56.71	Ribosome production factor 1 OS=Homo sapiens GN=RP...	[more]

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TCONS_00015214-protein (polypeptide) - C. hemisphaerica