TCONS_00014196-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014196-protein
Unique Name	TCONS_00014196-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	620

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014196-protein ID=TCONS_00014196-protein|Name=TCONS_00014196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp
MAQENIETKSKRGTWGHKSEFILASIGLAVGLGNIWRFPYLCQRNGGGAF
LIPYVIFMVIEGLPIFFIEFAIGQRFRTSSVNAWAKVSPALKGIGWSCVC
VSTFVCIYYIVVLSWCIYYFLMSFTSDLPWDIEQTCLNNPQYQTILNNVA
KYKGNATELPKWIDAMDSFSDCCVRDPAQWYFYQRVLRVSSGIEDTGVGL
NVNLVGCLILAWIITYLCVVKGIKSSGKVVYFTAVFPYIVLLIFFFRGVT
LDNAKNGIKTFFNPDWSKLEDPQIWMDAATQIFFTLSLGFGALVAFASYM
PIKNNCIRDAYTVVFINCGTSVFAGVVVFSILGYRELKTGLPADKVSSGP
GLAFMAFSDAILLMKGSPFWAVMFFLMLILLGIDSEFGVLEATITPFYDS
GVVKMRKEVFTAIFAFVMFLIGLCLVAGNGFYIFQIFDDFSVSLPLLFIA
FFQCIGVTWIYGSDNFANDIEYMTGSRPNIFWMLCWKYISPVALLVVFIT
NINTLSKDTAKYAVYTGCPSDPLHYQHAGTSEWLTKVEYPPWGQFLIVLV
VGVSFLPILIYLFLDLYRRPGAWKAGIKKRFFTSWHEYLPDPAMFDASRR
KTTYQMEEMVLASLENDKMK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007947	XLOC_007947	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014196	TCONS_00014196	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 49..68 score: 52.05 coord: 93..119 score: 37.22 coord: 364..383 score: 54.34 coord: 311..331 score: 45.43 coord: 443..463 score: 40.05 coord: 20..41 score: 65.87 coord: 229..246 score: 56.38 coord: 483..503 score: 30.76
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 12..566 e-value: 3.1E-180 score: 600.2
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 36..50
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 11..571 score: 93.03
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 12..142 coord: 176..567

Blast

[Close]

BLAST of TCONS_00014196-protein vs. Swiss-Prot (Human)
Match: S6A12 (Sodium- and chloride-dependent betaine transporter OS=Homo sapiens GN=SLC6A12 PE=1 SV=2)

HSP 1 Score: 402.905 bits (1034), Expect = 4.096e-133
Identity = 235/598 (39.30%), Postives = 346/598 (57.86%), Query Frame = 0

Query:    1 MAQENIETKSKRGTWGHKSEFILASIGLAVGLGNIWRFPYLCQRNGGGAFLIPYVIFMVIEGLPIFFIEFAIGQRFRTSSVNAWAKVSPALKGIGWSCVCVSTFVCIYYIVVLSWCIYYFLMSFTSDLPWDIEQTCLNNPQYQTILNNVAKYKGNATELPKWIDAMDSFSDCCVRDPAQWYFYQRVLRVSSGIEDTGVGLNVNLVGCLILAWIITYLCVVKGIKSSGKVVYFTAVFPYIVLLIFFFRGVTLDNAKNGIKTFFNPDWSKLEDPQIWMDAATQIFFTLSLGFGALVAFASYMPIKNNCIRDAYTVVFINCGTSVFAGVVVFSILGYRELKTGLPADKVS-SGPGLAFMAFSDAILLMKGSPFWAVMFFLMLILLGIDSEFGVLEATITPFYDSGVVKMRK----EVFTAIFAFVMFLIGLCLVAGNGFYIFQIFDDFSVS-LPLLFIAFFQCIGVTWIYGSDNFANDIEYMTGSRPNIFWMLCWKYISPVALLVVFITNINTLSKDTAKYAVYTGCPSDPLHYQHAGTSEWLTKVEYPPWGQFLIVLVVGVSFLPILIYLFLDLYRRPGAWKAGIKKRFFTSWHEYLPDP 592
            + QE+ +    RG W +K EF+L+  G  +GLGN+WRFPYLC +NGGGAF IPY IF  + G+P+FF+E A+GQ     SV AW K+ P  +GIG + V + +++ +YYI++L+W ++Y   SFTS+LPW       N       LN    + G  T  P      ++F+      P   ++ +RVL ++SGI D G  L   L  CL+LAW+I Y C+ KG+KS+GKVVYFTA FPY++L+I   RGVTL  A  GI  +  PD  +L+DPQ+WMDA TQIFF+ ++  G L A  SY    NNC +D   + F+N  TS  AG VVFSILG+   + G+P  +V+ SGPGLAF+AF  A+ +M  S  W+ +FF+MLI LG+DS+F  +E  +T   D    ++RK    E+     A + +LIGL LV   G YIFQ+FD ++ S + LLF++ F+ + ++W+YG+D F ++IE M G RP     + W +++P   L  F+    +LSK T            PL Y +           YPPWG  +   +   S + + +++ + L +  G ++  +++    +    LP P
Sbjct:   25 LDQEDEDQVKDRGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYFIFFFVCGIPVFFLEVALGQYTSQGSVTAWRKICPLFQGIGLASVVIESYLNVYYIIILAWALFYLFSSFTSELPWTTCNNFWNTEHCTDFLN----HSGAGTVTP-----FENFTS-----PVMEFWERRVLGITSGIHDLG-SLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVILLIRGVTLPGAYQGIIYYLKPDLFRLKDPQVWMDAGTQIFFSFAICQGCLTALGSYNKYHNNCYKDCIALCFLNSATSFVAGFVVFSILGFMSQEQGVPISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLIFLGLDSQFVCVECLVTASIDMFPRQLRKSGRRELLILTIAVMCYLIGLFLVTEGGMYIFQLFDYYASSGICLLFLSLFEVVCISWVYGADRFYDNIEDMIGYRPWPLVKISWLFLTPGLCLATFLF---SLSKYT------------PLKYNNVYV--------YPPWGYSIGWFLALSSMVCVPLFVVITLLKTRGPFRKRLRQ--LITPDSSLPQP 582

The following BLAST results are available for this feature:

BLAST of TCONS_00014196-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014196-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S6A12	4.096e-133	39.30	Sodium- and chloride-dependent betaine transporter...	[more]

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TCONS_00014196-protein (polypeptide) - C. hemisphaerica