TCONS_00014133-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014133-protein
Unique NameTCONS_00014133-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014133-protein ID=TCONS_00014133-protein|Name=TCONS_00014133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
ILSFRDSNICPIDHEVIELDGTYPDRAKQREILMLACFCPNAKFGCGWQG
SVKLLEDHNAVCQFGPTECVFCSKKFPPSEMEQHQKQCVLAMSNMACPYA
HAGCQFQVSEFESVDEHITRNALLHAKMFSEHYKANETKHQQEKTEMVNQ
IKGLQLELHSTKEKFTQTTRQMQQEFENKIDEFQKVLQVKLSEVEAIKAR
GPSGGDGTVMSAEMSSGIHKEIKKTRDDVTQMNKTVSNITHNLADVDLRH
QLHENTTFDGHMIWKIDNFETRYQQAVIGKTTALHSAPSFTSRYGYKFCA
RLYLNGDGMGKGTHVSLFFVLMKSEFDTLLEWPFNKKVTFTLINQENQER
NVVETFNADVNSSSFKKPTKHMNIASGCPYFVSQEKLKKPNSGFIKDGCF
FLEIKLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007909XLOC_007909Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014133TCONS_00014133Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR012227TNF_rcpt--assoc_TRAF
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 264..387
e-value: 6.3E-12
score: 55.6
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 259..406
score: 17.885
IPR008974TRAF-likeGENE3D2.60.210.10coord: 239..407
e-value: 1.3E-34
score: 118.9
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 36..90
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 259..406
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 68..144
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 30..77
e-value: 1.3E-11
score: 44.0
coord: 78..118
e-value: 1.3E-5
score: 24.8
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 2..91
e-value: 9.5E-14
score: 48.9
coord: 72..407
e-value: 2.8E-76
score: 255.1

Blast
[Close]
BLAST of TCONS_00014133-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 8.530e-66
Identity = 147/478 (30.75%), Postives = 224/478 (46.86%), Query Frame = 0 
Query:   10 CPIDHEVIELDGTYPDRAKQREILMLACFCPNAKFGCGWQGSV-----------------------------KLLEDH-NAVCQFGPTECVFCSKKFP-----------------------------PSEMEQHQKQCVLAMSNMACPYAHAGCQFQVSEFESVDEHITRNALLHAKMFSEHYKANETKHQQEKTEMVNQIKGLQLELHSTKEKF---TQTTRQMQQEFENKIDEFQKVLQVKLSEVEAIKARGPSGGDGTVMSAEMSSGIHKEIKKTRDDVTQMNKTVSNITHN---------------------LADVDLRHQLHENTTFDGHMIWKIDNFETRYQQAVIGKTTALHSAPSFTSRYGYKFCARLYLNGDGMGKGTHVSLFFVLMKSEFDTLLEWPFNKKVTFTLINQENQERNVVETFNADVNSSSFKKPTKHMNIASGCPYFVSQEKLKKPNSGFIKDGCFFLEI 404
            C    E I  D  + D   +REIL L  +C N   GC  Q  +                             K L DH    C++    C  C  + P                              SE+  H  +CV A S   C +   GC FQ +  + +  H   +A+ H  +  E   + E K    + E V + K +Q  LH+    F    +  ++M +  E+KI   Q+V+  +  +++ +             +  M S + + ++    ++  ++K+   +  N                     LAD+DLR Q+ E  +++G +IWKI +++ R Q+AV+GKT +L+S P +T  +GYK CAR+YLNGDGMGKGTH+SLFFV+M+ E+D LL WPF +KVT  L++Q +  R++ + F  D NSSSFKKPT  MNIASGCP FV+Q  L+  N  +IKD   F+++
Sbjct:   88 CTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPST--CSFKRYGCVFQGTN-QQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQ-SLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSV-ESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKV 558
The following BLAST results are available for this feature:
BLAST of TCONS_00014133-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF38.530e-6630.75TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
back to top