TCONS_00013580-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013580-protein
Unique NameTCONS_00013580-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013580-protein ID=TCONS_00013580-protein|Name=TCONS_00013580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=984bp
MDQQAGLFKDDILRGVSLSVKNLQHQNADSIAIHPKKVFEITKHNPHFRN
LLNYLDMAFSFGLKDSKKGYWPLVKKVVHSSVLEIIEKHPVVSTELHKGY
IWLYLTFVENSMDSYLRMILVEKKQVKNFYKNFSILRDEERCEILLNLVA
GVEALTFAIDIKDPYLDYGHDTVLREEKVIIRVQPQKTPPQQTSTKREPK
QPDITLLEGGRRRSGKYPDLVTEHSRSLGSDVSEPADDLVTHIQKKTKKK
KTRESFSKNLPEVLPPSSLPPSSSLPDKVLRGTIPKQGSSSSTPSRQSPA
NQSPSTRSPANQSPVVSPSNSQSTLTSPSSGILKTQDPMMKSFSTGDFEY
REFLATYDETAETKTEKDIAEIEKAVFSISDNIDGTSNDMVRLKLEDKTE
SNQPGRLSPQPPSNSIYHHYEENDDDYELYRADSFDRFCRRGSPDSPDPD
RDQEIGDDIESRGSGNRSSRSMSVVTTDEQGQLAENDVEPSPLPVPPQIS
QESLLRNHSPMTKSISKTSIDKLNDARYDTKAGILLPTLPRRPNLDDATG
LFEEVTIDQNTLVLISLDIFQQPTESFIKAFKVYVGHLSGYGAPFYLLIS
NFAIYLLKQRATVQTGFLNMLSVNIDSINKVQTGLNFQEIFIFHDQGCLR
LSTGDEINSRAIISTIKATIKSSQGVASGDGNEPMASNTYNELDLVIQDW
LICHTQVEEPEILHFSLVYFSSIASPDAKQKKKVVKAGEMLYRHSNFGLI
NYWERAFFALRGHYLYQYNAKRTDLKQKYDLSTQCGGCINSGREDNLNIL
KIIGVDGSSTILELAIADHDEADDWLMNICQAVADAKIREGGVIEEPGAL
IACGMVLTQNKIYLFNQDPRSGRLVLEDSCPVHDITQVCVDNQCRTFCAL
SIDHNLDSNSTDKTIWLIDFQSEYEVGKFEQRLFGCWQLLYQVPLQFVLL
NDPKLKSTIHHVLNDKGKQHGEIGKEALYELISN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007587XLOC_007587Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013580TCONS_00013580Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004012Run_dom
IPR001849PH_domain
IPR011993PH_dom-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004012RUN domainSMARTSM00593893paper3coord: 99..162
e-value: 8.9E-9
score: 45.2
IPR004012RUN domainPFAMPF02759RUNcoord: 75..161
e-value: 1.3E-8
score: 34.8
IPR004012RUN domainPROSITEPS50826RUNcoord: 42..164
score: 22.514
IPR001849Pleckstrin homology domainSMARTSM00233PH_updatecoord: 734..836
e-value: 5.9E-4
score: 29.1
IPR001849Pleckstrin homology domainPROSITEPS50003PH_DOMAINcoord: 733..834
score: 6.855
IPR011993PH domain-likeGENE3D2.30.29.30coord: 721..841
e-value: 4.0E-9
score: 35.6
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 733..836
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 438..495
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..338
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..419
NoneNo IPR availableSUPERFAMILY140741RUN domain-likecoord: 9..167

Blast
[Close]
BLAST of TCONS_00013580-protein vs. Swiss-Prot (Human)
Match: PKHM2 (Pleckstrin homology domain-containing family M member 2 OS=Homo sapiens GN=PLEKHM2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.253e-20
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 0 
Query:    4 QAGLFKDDILRGVSLSVKNLQHQNADSIAIHPKKVFEITKHNPHFRNLLNYLDMAFSFGLKDSKKGYWPLVKKVVHSSVLEIIEKHPVVSTELHKGYIWLYLTFVENSMDSYLRMILVEKKQVKNFYKNFSILRDEERCEILLNLVAGVEALTFAIDIKDPYLD 167
            + G  KD IL  +SLSVK LQ       A    ++  I  H+   + L  +LD A  +GL+D   GYW LV        ++ IE    V+T L +   WLYL   ENS++SYLR+       +  +Y   +++   +   + L LV+G+E + F +D+  PYLD
Sbjct:    2 EPGEVKDRILENISLSVKKLQ----SYFAACEDEIPAIRNHDKVLQRLCEHLDHALLYGLQDLSSGYWVLVVHFTRREAIKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLGLLHKYYVKNALVCSHDHLTLFLTLVSGLEFIRFELDLDAPYLD 161
The following BLAST results are available for this feature:
BLAST of TCONS_00013580-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKHM22.253e-2033.54Pleckstrin homology domain-containing family M mem... [more]
back to top