TCONS_00012394-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012394-protein
Unique NameTCONS_00012394-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012394-protein ID=TCONS_00012394-protein|Name=TCONS_00012394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MDHLEEKASNTVEHVQQLLQLWRHYTNILPVEDTSVKNIANDICCLLSKT
NSMDALSVFLNELPNTDVYWTEECILRAKAEVALHKKDTDTVKKILKENQ
FTNHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGI
RKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWF
ANARRRSKTNSEMKMKRCEEGFSNSLKPSFYPRKTGSPSSCTLLPSPSSS
SVSMTSSTSDQHGSTGLGSSYHHYFSYDNIPQGGNNNCSNNNNDSLVMSS
TSSMDSVGGGGGGGNCGVSSGGSGATPWYSSLNNIHSPVLPLRLEDSSHY
SSHHYYYNNPNVHHNTALATHSTPPNLGSAPYNNTNNTGGVRYLYPPSYH
QHCSNNYFATNYGASLQH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006968XLOC_006968Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012394TCONS_00012394Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR031701SIX1_SD
IPR008422Homeobox_KN_domain
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 149..214
e-value: 5.4E-11
score: 52.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 147..210
score: 12.503
NoneNo IPR availableGENE3D1.10.10.60coord: 149..214
e-value: 1.4E-12
score: 46.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..315
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..265
NoneNo IPR availableCDDcd00086homeodomaincoord: 151..208
e-value: 1.62568E-10
score: 55.7125
IPR031701Homeobox protein SIX1, N-terminal SD domainPFAMPF16878SIX1_SDcoord: 42..143
e-value: 1.9E-23
score: 83.0
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 167..206
e-value: 2.6E-13
score: 49.5
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 185..208
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 151..215

Blast
[Close]
BLAST of TCONS_00012394-protein vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.560e-32
Identity = 67/185 (36.22%), Postives = 110/185 (59.46%), Query Frame = 0 
Query:   27 NILPVEDTSVKNIANDICCLLSKTNSMDALSVFLNELPNTDVYWTEECILRAKAEVALHKKDTDTVKKILKENQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 209
            ++LP    + + +A  +C +L +  +++ L  FL  LP  D     E +L+AKA VA H+ +   + KIL+ +QF+  NH KL ++W KAHY+E E  + + L A+ ++RVR++ P PRTI  +G   +    +++ G+L+ W   +  +PYPS  EK++LA  +GLT  QV  WF N R+R + 
Sbjct:    2 SMLPSFGFTQEQVAC-VCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIW-DGEETSYCFKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012394-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX14.560e-3236.22Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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