TCONS_00012218-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012218-protein
Unique NameTCONS_00012218-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012218-protein ID=TCONS_00012218-protein|Name=TCONS_00012218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MKFYAIFVCCMVTIINLELCYAQKEPPADSQRRPRPPLIEKPNLVEEKET
TSNANEKSTELEKSVKKTSRRDYNKLCNICRQMYIMSDKEFEEKKDVDKF
CVRVKQVMECMANLKKERIQCGMFFNLVFRTGVFIQNRKHKCDERNITVG
DLDSIFNKRETENTERVNVGQNCRYRKRNTTQSKLKHCGMFGDPHLKTFL
GVRQTCIVEGTWTLLDNEYMKVEVTNRMVQNVDVSRAATATEKIAIQFKE
RDLVCSQEKNYVATSQYLPEAFSDGSRTNGPPGCLTTISKYDQDSVKLKA
CRSNTTILIRRVGRYLTFNILSPFEIVNKSSGLCHGGCPTSELFDYLSFF
ANLINQNDVTNDIRTAPRSNDVSVTSQLSYHEAMHLCSVRNVTDFYYDSC
VFDLLMTGERQFSLAAKLAMLDAQSMDPKLRLRRSNSVVLQVASQQQQRV
QNYSSSRTLTHSSVLVVLLTLWCVLALR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006871XLOC_006871Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012218TCONS_00012218Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010536RGM_N
IPR009496RGM_C
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010536Repulsive guidance molecule, N-terminalPFAMPF06535RGM_Ncoord: 79..249
e-value: 1.1E-27
score: 97.3
NoneNo IPR availableGENE3D3.40.1000.10coord: 194..343
e-value: 1.1E-36
score: 125.2
IPR009496Repulsive guidance molecule, C-terminalPFAMPF06534RGM_Ccoord: 255..428
e-value: 5.3E-36
score: 123.6

Blast
[Close]
BLAST of TCONS_00012218-protein vs. Swiss-Prot (Human)
Match: RGMA (Repulsive guidance molecule A OS=Homo sapiens GN=RGMA PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.640e-43
Identity = 106/279 (37.99%), Postives = 144/279 (51.61%), Query Frame = 0 
Query:  162 ENTERVNVGQNCRYRK---RNTTQSKLKHCGMFGDPHLKTFLGVRQTCIVEGTWTLLDNEYMKVEVTNRMVQNVDVSRAATATEKIAIQFKERDLVCSQEKNYVATSQYLPEAFSDGSRTNG---PPGCLTTISKYDQDSVKLKACRSNTTILIRRVGRYLTFNILSPFEIVNK-----SSG--LCHGGCPTSELFDYLSFFANLINQNDVTNDIRTAPRSNDVSVTSQLSYHEAMHLCSVR-NVTDFYYDSCVFDLLMTGERQFSLAAKLAMLDAQSM 426
            ++ ER +  + C Y K   +++      HCG+FGDPHL+TF    QTC V+G W L+DN Y+ V+VTN  V       AATAT K+ I FK     C  +K Y A    LP AF DGS+  G       L    K     V+++A    TTI++R+VGRYLTF +  P E+VN      S G  LC  GCP ++  D+ +F  N     + T   R A  S   +      Y  A+  C  +  V D YY +CVFDLL TG+  F+LAA  A+ D + +
Sbjct:  134 DSQERSDSPEICHYEKSFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLP---GSAATATSKLTIIFKNFQ-ECVDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNA----EGTGARRLAAASPAPTAPETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKML 404
The following BLAST results are available for this feature:
BLAST of TCONS_00012218-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGMA1.640e-4337.99Repulsive guidance molecule A OS=Homo sapiens GN=R... [more]
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