TCONS_00011936-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011936-protein
Unique NameTCONS_00011936-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011936-protein ID=TCONS_00011936-protein|Name=TCONS_00011936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1327bp
MKLALFICFLVATIISKCHGIDLFCTPDSMTITLEMNIDPKVYSTSIVKF
ENTNCTATTNGTHFFITSQFNECNTQIGETVDDIVFSNRVIVDPNNLKPD
AIIQRLEHTEHIYPVNCLLRKENVVVTNTGYNLTGDGWEEWGAWSECTKT
CGGGTTTRKRDCRVSRRDDLNCPGLEVEVAHCNNVTCPLTCDDIECDFFN
HEECEPHYIFQNATCECMKGWYELDDGTCDTEEKIVGVQITLGSDFQDEF
VSFKSNITSDFKSRIETQFTLQLGLVPPERFMVTEFSAGSVIVDGLVILP
RNTTENKTTIQEKLVTELQTNTTGLLEEFNVTKINKVNETYICELESDTC
NRTRSNCTDTPDLLTHYQCDCFEGYINKTVYICQDYCEYGIDTCNNISTV
CRGTPGVGRHYECDCAFGFERLDNSTDTCTPMPRPCDNSTMNTCNNSTST
CINTFTAPIYYNCACNDGYLKFNNTVDQCLDYCVSNNDTCDDNTTMCRAT
PGDGRHYECDCKYKHVRLDNNTDACTLADTPCAWGNDTCDKDISTCIDTY
THPNYFDCNCSAGYVKQNHTTCFDFCVDNSDTCNDTSTTCLATPGKGRHY
ECPCKHGFERLDNNTDSCTPMPRPCDTGKDTCNKTRSNCTNTLTAPVYFN
CSCGDGYLKFNNSVDDCQDYCHIEADSCNKTSTMCEATPGKGRHYECPCK
FGFERLDNNTDSCTPMPRPCDTGKDTCNKTSSNCTNSFEAPFYYNCTCEA
GYLKFNSSLDQCHEYCRIEADTCNTTSTTCMSTPGKGRHYECPCKHGFER
LDNNMDKCTPMPRPCDTGKDTCNKTRSNCTNTLTAPVYFNCSCGDGYLKF
NNSVDDCQDYCHIEADSCNKTSTMCEATPGKGRHYECPCKFGFERLDNNT
DSCTPMPRPCDTGKDTCNMTTSTCNNTFTNPDYYNCSCNPGYFKEGGSLD
KCSDHCQFGVDTCNTTSTTCKATPGSGRYFECPCKFGFERLDNNMDKCTP
MPRPCDTGKDTCNKTRSNCTNTLTAPVYYNCSCGDGYLKFNNSVDDCQDY
CHIEADSCNKTSTMCEATPGKGRHYECPCKFGFERLDNNTDSCTPMPRPC
DTGKDTCNMTTSTCNNTFTNPDYYNCSCNPGYFKEGGSLDKCSDHCQFGV
DTCNTTSTTCKATPGSGRYFECPCKFGFERLDNNMDKCTPMPRPCDTGKD
TCNKTRSNCTNTLTAPVYYNCSCGDGYLKFNNSVDQCQDYCHIEADSCNK
TSTMCEATPGKGRHYECPCKFGFERLDNNTDSCTPMPRPCDTGKDTCNKT
SSNCTNSFEAPFYYNCTCEDGYLKFNX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006702XLOC_006702Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011936TCONS_00011936Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR000884TSP1_rpt
IPR013032EGF-like_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 386..430
e-value: 41.0
score: 9.0
coord: 814..858
e-value: 180.0
score: 1.7
coord: 575..619
e-value: 18.0
score: 13.2
coord: 1050..1094
e-value: 85.0
score: 5.3
coord: 670..714
e-value: 85.0
score: 5.3
coord: 1099..1143
e-value: 200.0
score: 1.2
coord: 624..668
e-value: 180.0
score: 1.7
coord: 1004..1048
e-value: 150.0
score: 2.4
coord: 955..999
e-value: 210.0
score: 0.8
coord: 765..809
e-value: 36.0
score: 9.6
coord: 342..384
e-value: 24.0
score: 11.6
coord: 719..763
e-value: 180.0
score: 1.7
coord: 1145..1189
e-value: 210.0
score: 0.8
coord: 860..904
e-value: 85.0
score: 5.3
coord: 1194..1238
e-value: 150.0
score: 2.5
coord: 435..480
e-value: 35.0
score: 9.7
coord: 909..953
e-value: 200.0
score: 1.2
coord: 195..230
e-value: 45.0
score: 8.5
coord: 531..573
e-value: 42.0
score: 8.9
coord: 1240..1284
e-value: 85.0
score: 5.3
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 138..188
e-value: 1.6E-9
score: 47.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 140..187
e-value: 2.3E-8
score: 34.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 133..188
e-value: 1.0E-11
score: 44.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 136..188
score: 12.36
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 135..187
NoneNo IPR availableGENE3D2.10.25.10coord: 394..432
e-value: 0.1
score: 12.5
NoneNo IPR availableGENE3D2.10.25.10coord: 482..536
e-value: 0.27
score: 10.9
coord: 671..731
e-value: 0.042
score: 13.5
coord: 765..826
e-value: 0.0068
score: 16.0
NoneNo IPR availableGENE3D2.10.25.10coord: 1048..1098
e-value: 0.031
score: 14.1
coord: 858..908
e-value: 0.028
score: 14.2
coord: 955..1003
e-value: 0.012
score: 15.4
coord: 1242..1300
e-value: 0.03
score: 14.1
coord: 622..670
e-value: 0.52
score: 10.1
coord: 1145..1197
e-value: 0.011
score: 15.5
NoneNo IPR availableGENE3D2.10.25.10coord: 435..481
e-value: 0.54
score: 10.1
NoneNo IPR availableGENE3D2.10.25.10coord: 1198..1241
e-value: 0.23
score: 11.2
NoneNo IPR availableGENE3D2.10.25.10coord: 575..621
e-value: 0.0018
score: 18.0
coord: 909..954
e-value: 0.14
score: 12.0
coord: 1099..1144
e-value: 0.14
score: 12.0
NoneNo IPR availableGENE3D2.40.490.10coord: 280..393
e-value: 1.9E-4
score: 20.9
NoneNo IPR availableGENE3D2.10.25.10coord: 537..574
e-value: 0.051
score: 13.2
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 369..383

Blast
[Close]
BLAST of TCONS_00011936-protein vs. Swiss-Prot (Human)
Match: FBN2 (Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.993e-16
Identity = 235/951 (24.71%), Postives = 344/951 (36.17%), Query Frame = 0 
Query:  437 DNSTMNTCNNSTSTCINTFTAPIY--YNCACNDGY---LKFNNTVDQCLDYCVSNNDTCDDNTTMCRATPGDGRHYECDCKYKHV-RLDNNT--DACTLADTPCAWGNDTCDKDISTCIDTYTHPNYFDCNCSAGY---------VKQNHTTCFDFCVDNSDTCNDTSTT----CLATPGKGRHYEC-------PCKHGFERLDNNT----DSCTPMPRPCDTGKDTCNKTRSNCTNTLTAPVYFNCSCGDGYLKFNNSVDDCQDY----CHIEADSCNKTSTMCEATPGKGRHYECPCKFGFERLDNNTDSCTPMPRPCDTGKDTCNKTSSNCTNSFEA----PFYYNCTCEAGYLKFNSSLDQCHEYCRIEADTCNTTSTTCMSTPGKGRHYECPCKHGF-----ERLDNNMDKCTPMPRPCDTGKDTCNKTRSNCTNTLTAPVYFNCSCGDGYLKFNNSVDDCQDYCHIEADSCNKTSTMCEA-----TPGKGRHYECPCKFGFERLDNNTDSCTPMPRPCDTGKDTCNMTTSTCNNT--FTNPDYYNCSCNPGYFKEGGSLDKCSDHCQFGVDTCNTTSTTC--KATPGSGRYFECPCKFGFERLDN-----NMDKCTPMPRPCDTGKDTCNKTRSNCTNTLTAPVYYNCSCGDGYLKFNNSVDDCQDYCHIEADSCNKTSTMCEATPGKGRHYECPCKFGFERLDNNTDSCTPMPRPCDTGKDTCNMTTSTCNNTFTNPDYYNCSCNPGYFKEGGS---LDKCSDHCQFGVDTCNTTSTTCKATPGSGRYFECPCKFGFERLD---NNMDKCTPMPRPCDTGKDTCNKTRSNCTNTLTAPVYYNCSCGDGYLKFNNSVDQCQDYCHIEADSCNKTST----MCEATPGKGRHYECPCKFGFERLDNNTDSCTPMPRPCDTGKDTCNKTSSNCTNSFEAPFYYNCTC 1318
            D   +N C      C N     +   Y C CN GY       N +D  +D C+ N   CD+   +CR TPG    Y C C   +V R +  T  D       PC   N  C  ++ +          F+C CS G          +     TC+    D+    N    T    C AT G      C        C  G  R+   T    + C   P  C  G+         C N+  +   F+C C +G L  + +   C D     C+++ D            PGK R   C C  G          C   P+P     +T     +   N  +     PFY +             +++C  +  +       T   C +T G    ++C C  GF     ER   ++D+C   P  C +G          C NT   P  F C C +GY      + +C D      D C +   +C       T G    ++C C  G E L  + + C  +        + C+++ + C N         Y CSCNPGY +       C+D     +D C   +  C  + T   G Y EC C  G+  + +     ++D+C   P  CD G+         CTN    P  Y C C DG++  +  +  C D    + +S       CE T G    + C C+ G+  +   T  CT +   C+ G   C+M  S  N     P  + CSC  G+   G     LD+CS+    G   C + +  C  TPGS   + C C  GF       +++D+C      C+ G+             L  P  Y C C  G+   ++S   CQD      D C+  +      C   PG    + C C  G+E LD    +CT +    D   D  N  +  C N+   P  Y C C
Sbjct:  765 DGRDINECALDPDICANGICENLRGSYRCNCNSGYEPDASGRNCID--IDECLVNRLLCDNG--LCRNTPGS---YSCTCPPGYVFRTETETCEDINECESNPCV--NGACRNNLGS----------FNCECSPGSKLSSTGLICIDSLKGTCWLNIQDSRCEVNINGATLKSECCATLGAAWGSPCERCELDTACPRGLARIKGVTCEDVNECEVFPGVCPNGR---------CVNSKGS---FHCECPEG-LTLDGTGRVCLDIRMEQCYLKWDE----DECIHPVPGKFRMDACCCAVGAAW----GTECEECPKPGTKEYETLCPRGAGFANRGDVLTGRPFYKD-------------INECKAFPGM------CTYGKCRNTIGS---FKCRCNSGFALDMEERNCTDIDECRISPDLCGSGI---------CVNT---PGSFECECFEGYESGFMMMKNCMDI-----DECERNPLLCRGGTCVNTEGS---FQCDCPLGHE-LSPSREDCVDI--------NECSLSDNLCRNGKCVNMIGTYQCSCNPGY-QATPDRQGCTD-----IDECMIMNGGCDTQCTNSEGSY-ECSCSEGYALMPDGRSCADIDECENNPDICDGGQ---------CTNI---PGEYRCLCYDGFMA-SMDMKTCIDVNECDLNSNICMFGECENTKGS---FICHCQLGYS-VKKGTTGCTDVDE-CEIGAHNCDMHASCLN----IPGSFKCSCREGWIGNGIKCIDLDECSN----GTHQC-SINAQCVNTPGS---YRCACSEGFTGDGFTCSDVDECAENINLCENGQ------------CLNVPGAYRCECEMGFTPASDS-RSCQDI-----DECSFQNICVFGTCNNLPGM---FHCICDDGYE-LDRTGGNCTDI----DECADPINCVNGLCVNT---PGRYECNC 1558
The following BLAST results are available for this feature:
BLAST of TCONS_00011936-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBN22.993e-1624.71Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3[more]
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