TCONS_00011635-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011635-protein
Unique NameTCONS_00011635-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011635-protein ID=TCONS_00011635-protein|Name=TCONS_00011635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp
MSQLSIEIQKDGETTEGPILETLIHLMSQCNLKYDEIKSEEDSSSSVIVT
FKSQEEAIQAMDNLNGIDVMGSNVVVTVPEEVNGDAEASHEEESRPQHRE
TYDRRGGGRYNRRYTSPRYQNHMHDQSPGNYGYQQQQPHQPQQMDQYPCR
LLIPSHMVKVILGKNGTTITSIQKKTNTKIDIHRDKGSGRGRQTDDTLTS
IKGDPEAFSNAIKELLTVINAELESEENEDPMPLQLKLLAHDLLCGRIIG
KGGNNLKSVRQESGIKKLIISNSIYDEGGQFGPNGMMVSLGERVITVEGT
VDAISAAERIISQRLRDYMEKDLKNSTNNQQVSNGYCGGGQTNNYYGSGG
NASGSYPQMQMMYPASRNPYQQYPMGYAGYYPYPYTNTYPGVLGQGYPPF
SGVMTSPPQALYGEEETCAILIPTKEVGAVIGRNGGYINKVKQYSNAQVR
VVKGEEGGESRVEIRGTPDAQWRASLCVFGKIKETMKVPYSDAQLRTEFM
VPGSCVGRIIGKKGQVVQDIQDKAQTDIEVPKDKQGGDDVPVYITGTFNG
TQIALNRIRDIMQRARVKPMAGEEEQE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006529XLOC_006529Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011635TCONS_00011635Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR015946KH_dom-like_a/b
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 232..316
e-value: 4.5E-9
score: 46.1
coord: 493..563
e-value: 1.1E-13
score: 61.4
coord: 145..220
e-value: 2.2E-10
score: 50.5
coord: 414..483
e-value: 8.7E-5
score: 31.9
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 252..338
e-value: 1.4E-12
score: 47.3
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 487..577
e-value: 6.1E-16
score: 57.5
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 413..486
e-value: 4.4E-11
score: 41.7
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 497..559
e-value: 1.3E-13
score: 50.5
coord: 150..215
e-value: 3.5E-12
score: 45.9
coord: 243..312
e-value: 6.9E-10
score: 38.5
coord: 419..471
e-value: 1.3E-10
score: 40.8
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 132..215
e-value: 3.2E-16
score: 58.3
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 137..221
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 231..318
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 489..565
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 410..484
NoneNo IPR availableGENE3D3.30.70.330coord: 15..106
e-value: 1.9E-5
score: 24.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..202
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 146..215
score: 14.592
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 233..311
score: 13.083
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 415..478
score: 13.544
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 494..558
score: 14.613
NoneNo IPR availableCDDcd00105KH-Icoord: 150..216
e-value: 5.55485E-10
score: 54.8735
NoneNo IPR availableCDDcd00105KH-Icoord: 420..474
e-value: 1.4672E-8
score: 51.0215
NoneNo IPR availableCDDcd00105KH-Icoord: 498..558
e-value: 3.30934E-13
score: 64.1183
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 216..251
e-value: 0.011
score: 15.2
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 14..115

Blast
[Close]
BLAST of TCONS_00011635-protein vs. Swiss-Prot (Human)
Match: IF2B2 (Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens GN=IGF2BP2 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.836e-57
Identity = 163/532 (30.64%), Postives = 263/532 (49.44%), Query Frame = 0 
Query:   42 DSSSSVI-VTFKSQEEAIQAMDNLNGIDVMGSNVVVT-VPEEVNGDAEASHEEESRPQHRETYDRRGGGRYNRRYTSPRYQNHMHDQSPGNYGYQQQQPHQPQQMDQYPCRLLIPSHMVKVILGKNGTTITSIQKKTNTKIDIHRDKGSGRGRQTDDTLTSIKGDPEAFSNAIKELLTVINAELESEENEDPMPLQLKLLAHDLLCGRIIGKGGNNLKSVRQESGIKKLIISNSIYDEGGQFGPNGMMVSLGERVITVEGTVDAISAAERIISQRLRDYMEKDLKNSTNNQQVSNGYCGGGQTNNYYGSGGNASGSYPQMQMMYPASRNPYQQYPMGYAGYYPYPYTNTYPGVLGQGYP-----PFSGVMTSPPQALYGEEETCAILIPTKEVGAVIGRNGGYINKVKQYSNAQVRV--VKGEEGGESRVEIRGTPDAQWRASLCVFGKIK-ETMKVPYSDAQLRTEFMVPGSCVGRIIGKKGQVVQDIQDKAQTDIEVPKDK--QGGDDVPVYITGTFNGTQIALNRIRDI 561
            D+ ++V+ VT+ ++EEA  AM+ L+G      +  ++ +P+E     E S    S PQ           R  R   S R Q H    +PG          Q +Q+D +P R+L+P+  V  I+GK G TI +I K+T +++DIHR + SG   +      +I   PE  S A + +L ++  E +  +  + +P  LK+LAH+ L GR+IGK G NLK +  E+G K  I  +S+ D         + +   ER ITV+GTV+A ++AE  I ++LR+  E D+        +  G        N    G  ++G       +   S     +     A Y+P+    T+ G     YP     PF      P    Y E+E   + IPT+ VGA+IG+ G +I ++ +++ A +++   +G +  E  V I G P+AQ++A   +FGK+K E    P  + +L     VP S  GR+IGK G+ V ++Q+    ++ VP+D+     ++V V I G F  +Q A  +IR+I
Sbjct:  117 DTETAVVNVTYATREEAKIAMEKLSGHQFENYSFKISYIPDE-----EVS--SPSPPQ-----------RAQRGDHSSREQGH----APGGTS-------QARQID-FPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKP----VTIHATPEGTSEACRMILEIMQKEADETKLAEEIP--LKILAHNGLVGRLIGKEGRNLKKIEHETGTK--ITISSLQD---------LSIYNPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGL-------NLSALGIFSTG-------LSVLSPPAGPRGAPPAAPYHPF---TTHSGYFSSLYPHHQFGPF------PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKIREI 578
The following BLAST results are available for this feature:
BLAST of TCONS_00011635-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF2B21.836e-5730.64Insulin-like growth factor 2 mRNA-binding protein ... [more]
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