TCONS_00011598-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011598-protein
Unique Name	TCONS_00011598-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	632

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011598-protein ID=TCONS_00011598-protein|Name=TCONS_00011598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MKDMCCDCGADLRKEPGVPGELAEATTATVPVVHNIQELWVSVEEAERLA
KQDEKQLLKSRKLVLVVDLDMTLIHTTVQPAAKVQDVYSFTLPNHQYEYH
TKLRPNAHKFLESISKYYELHIFTMGSRMYAHTIAKMLDPDGKHFAHRIR
SRDEFINSFSKFHDLKALFPCGDHMVCIIDDREDVWNFAPNLIMVKPYKY
FSGTDDVNDPFKANKDNKEGKTTTNGTTTTNEENATKDDDNKEKTKNGNT
SDEEEKKVEDGESKTEGAKDNDTTAKTTTNNNNHIKDTDDYLTYLGEILE
RIHKAFYETIDAVKEKGGVAKKDGEVTRFCSFGTLNPDVRVIAPQLRRQT
LTDCNLVFTGVIPTNVPPEKSRPWRTAISLGARVSNDVIEAKNESEIELH
TTHVVAARHGTQKAYKASKNPNQIKLVNPNWLWAANERWKRPDEADFIVP
AYDKPSPSGSRQGTPQHNSFEKSRNKISPLAQEGFELPGGYNPENFLGSF
SKNEIDAMDKEVEDFMHSEDEGSSDEEMRSSPPSSGQKRKRKQSSTMKKK
LKTSEDDKKDNDHGKDSSSSSSSDDDDSDDSSDSSDDGNSSSSTSSNSSA
SSSSSSDSSVADDDDDQLGSLLERRISESQTE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006496	XLOC_006496	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011598	TCONS_00011598	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004274	FCP1_dom
IPR001357	BRCT_dom
IPR011947	FCP1_euk
IPR023214	HAD-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004721	phosphoprotein phosphatase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 515..632
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..475
IPR004274	FCP1 homology domain	SMART	SM00577	forpap2	coord: 61..205 e-value: 2.4E-50 score: 183.2
IPR004274	FCP1 homology domain	PFAM	PF03031	NIF	coord: 64..206 e-value: 5.7E-27 score: 94.3
IPR004274	FCP1 homology domain	PROSITE	PS50969	FCP1	coord: 58..220 score: 32.694
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 348..439 e-value: 0.0081 score: 25.4
IPR001357	BRCT domain	GENE3D	3.40.50.10190		coord: 345..615 e-value: 3.2E-13 score: 49.3
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 346..449 score: 12.366
IPR001357	BRCT domain	CDD	cd00027	BRCT	coord: 353..434 e-value: 3.07602E-4 score: 38.4567
IPR001357	BRCT domain	SUPERFAMILY	52113	BRCT domain	coord: 350..450
IPR011947	FCP1-like phosphatase, phosphatase domain	TIGRFAM	TIGR02250	TIGR02250	coord: 57..201 e-value: 2.6E-46 score: 155.6
IPR023214	HAD-like domain	GENE3D	3.40.50.1000		coord: 47..327 e-value: 3.2E-49 score: 166.4
IPR023214	HAD-like domain	SUPERFAMILY	56784	HAD-like	coord: 55..203

Blast

[Close]

BLAST of TCONS_00011598-protein vs. Swiss-Prot (Human)
Match: CTDP1 (RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 1.246e-71
Identity = 125/264 (47.35%), Postives = 169/264 (64.02%), Query Frame = 0

Query:    1 MKDMCCDCGADLRKEPGVPG-ELAEATTATVPVVHNIQELWVSVEEAERLAKQDEKQLLKSRKLVLVVDLDMTLIHTTVQPAAKV--QDVYSFTLPNHQYEYHTKLRPNAHKFLESISKYYELHIFTMGSRMYAHTIAKMLDPDGKHFAHRIRSRDEFINSFSKFHDLKALFPCGDHMVCIIDDREDVWNFAPNLIMVKPYKYFSGTDDVNDPFKANKDNKEGKTT-TNGTTTTNEENATKDDDNKEKTKNGNTSDEEEKKVED 260
            MK +C +CG DL +     G +    +TATV +VH++ EL VS E+AE+L ++D+++L ++RKLVL+VDLD TLIHTT Q   ++  + ++ F L   +   HT+LRP+   FLE I+K YELH+FT GSR+YAHTIA  LDP+ K F+HRI SRDE I+ FSK  +L+ LFPCGD MVCIIDDREDVW FAPNLI VK Y YF GT D+N P  + +     K   + GT  +      +D +   +      S+  EK   +
Sbjct:  120 MKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARE 383

HSP 2 Score: 100.523 bits (249), Expect = 6.903e-22
Identity = 73/248 (29.44%), Postives = 117/248 (47.18%), Query Frame = 0

Query:  249 NTSDEEEKKVEDGESKTEGAKDNDTTAKTTTNNNNHIKDTDDYLTYLGEILERIHKAFYETIDAVKEKGGVAKKDGEVTRFCSFGTLNPDVRVIAPQLRRQTLTDCNLVFTGVIPTNVPPEKSRPWRTAISLGARVSNDVIEAKNESEIELHTTHVVAARHGTQKAYKASKNPNQIKLVNPNWLWAANERWKRPDEADFIVPAYD---------KPSPSGSRQGTPQHNSFEKSRNKISPLAQEGFEL 487
              +D +E + E   S+  G    ++  ++         D DD+L YL EIL R+H  +Y   D    K        E+          PD+R I P+L+ + L D  ++F+G+ PTN P EK+R    A +LGA++   ++ + +  +     TH++AAR GT+K  +A +    + +VNP+WLW+  ERW + +E  F  P  D          P+    R+G P    F      + P AQ G E+
Sbjct:  547 GCADRKEAETESQNSELSGVTAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRVHTDYYAKYDRYLNK--------EIEE-------APDIRKIVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHATALGAKILTRLVLSPDAPD---RATHLIAARAGTEKVLQAQEC-GHLHVVNPDWLWSCLERWDKVEEQLF--PLRDDHTKAQRENSPAAFPDREGVPPTALFHPM--PVLPKAQPGPEV 771

The following BLAST results are available for this feature:

BLAST of TCONS_00011598-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011598-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTDP1	1.246e-71	47.35	RNA polymerase II subunit A C-terminal domain phos...	[more]

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TCONS_00011598-protein (polypeptide) - C. hemisphaerica