TCONS_00010660-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010660-protein
Unique Name	TCONS_00010660-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	841

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010660-protein ID=TCONS_00010660-protein|Name=TCONS_00010660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=841bp
MPRSLEHRKICTWRKIKTNKMADKHVGKVSKPTFKKCNQRFDQVRSIFTR
DSSLIVSGSGSNVYLFHRSTGEIDKIFTEHKHEVLTVAINKNNPLQVISC
CKKKLMIWDYTDLTVVKTIKLKIENVTGVFINSSSIDLDYVYFKTKESLK
LKKREKIVHSMVKYKIKDGSQETISKVDSRENSVAFSSCGNYMVCLHRRD
LILHKITTNETTNHQAPCNELVCVDIHPQNQCIATGDSHGRILVWYNMFD
GVNSPQKHVVLHWHSMAPNDVIFSPDGLYLLSGGKENVLVLWHLESESKS
FQPRLGSKINHLFCSKDSRFIGVTMDNNMIQVISAIDHTLSSVLKFLAPV
IDSSSGLSYHKQFDSLVFNGSPEGQLQFYQPKSDKVLMTLDILSNNVISS
TKENEDGFSTVIDKVAFNETGNWMATLDVRNTPVLPTERRLCIWKYLDNQ
KTFILNTSINPPHKNDLVAVAFRPSMSSKKESNLLVTASTTGELKTWVQE
QIVNEEDDSVTEQWKLDSFYSVGSKTCRKAHFSQDGSLLAVLFDEVVIFD
PDNLSEVATLSWSYKKSDKLKTFCICNNESSCFLIAASQHNMIVWDLKTF
DVAWQLEATVTHLVADPFSKYFAAVVSHKKKQRYLMFDPSTPHPVIVVNE
LPKDSKIKDVIFVSPPSQLCDEWPETGEPYFMTETGDIYCLGDLDPIREN
IFNQSRDKEQSTFESIFGSSRPKERSTIADTYSHLPLGNPAKAAMRQMLT
TPSHILPDVNVMCNAFYHSLLLSSNKVKLTDDETKEENSTTINDEDEKMT
EEGSTINEDSGDQVQNVVLADLKLRKPKIDLLRSILAGKPE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005973	XLOC_005973	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010660	TCONS_00010660	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 34..67 e-value: 63.0 score: 5.6 coord: 207..246 e-value: 0.71 score: 17.9 coord: 254..293 e-value: 0.0034 score: 26.6 coord: 452..498 e-value: 32.0 score: 7.5 coord: 553..596 e-value: 100.0 score: 4.4 coord: 70..109 e-value: 0.024 score: 23.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 75..109 e-value: 0.22 score: 12.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 261..302 score: 10.776
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 8..208 e-value: 3.2E-12 score: 45.7
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 209..461 e-value: 8.8E-27 score: 93.3 coord: 462..688 e-value: 6.0E-13 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 780..811
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 214..302 score: 10.786
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 171..344 coord: 48..122
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 371..647

Blast

[Close]

BLAST of TCONS_00010660-protein vs. Swiss-Prot (Human)
Match: WDR75 (WD repeat-containing protein 75 OS=Homo sapiens GN=WDR75 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.200e-78
Identity = 223/773 (28.85%), Postives = 360/773 (46.57%), Query Frame = 0

Query:   45 RSIFTRDSSLIVSGSGSNVYLFHRSTGEIDKIFTEHKHEVLTVAINKNNPLQVISC-CKKKLMIWDYTDLTVVKTIKLKIENVTGVFINSSSIDLDYVYFKTKESLKLKKREKIVHSMVKYKI-KDGSQETISK--------VDSRENSVAFSSCGNYMVCLHRRDLILH--------KITTNETTNHQAPCNELVCVDIHPQNQCIATGDSHGRILVWYNMFDGVNSPQKHVVLHWHSMAPNDVIFSPDGLYLLSGGKENVLVLWHLESE-SKSFQPRLGSKINHLFCSKDSRFIGVTMDNNMIQVISAIDHTLSSVLKFLAPVIDSSSGLSYHKQFDSLVFNGSPEGQLQFYQPKSDKVLMTLDILSNNVISSTKENEDGFSTV-IDKVAFNETGNWMATLDVRNTPVLPTERRLCIWKYLDNQKTFILNTSINPPHKNDLVAVAFRPSMSSKKESNLLVTASTTGELKTWVQEQIVNEEDDSVTEQ--WKLDSFYSVGSKTCRKAHFSQDGSLLAVLFDEVV-IFDPDNLSEVATLSWSYK-----KSDKLKTFCICNNESSCFLIAASQHNMI-VWDLKTFDVAWQLEATVTHLVADPFSKYFAAVVSHKKKQRYLMFDPSTPHPVIVVNELPKDSKIKDVIFV--SPPSQLCDE---WPETGEPYFMTETGDIYCLGDLDPIRENIFNQSRD--KEQST----FESIFGSSRPKE----RSTIADTYSHLPLGNPAKAAMRQMLTTPSHILPDVNVMCNAFYHSLLLS 773
            R++F+ DS  I   SG  V ++   T E   I   H++ V  + +N NN LQ+ SC     + +WDY D  ++KT  +  + +  +F  + + D  +V         + K +  +  +V  K+ K  SQE  +K        ++     +AF + G Y+  +    L ++        + T + + N +   N   CV  HP   CIA+G   G+I +W N +D  +    +  LHWH     D+ FS  G  LLSGG+E+VLV W   +E +K F PRLG+ I H+  S        +  +N I +I   +   S+V++ L       +GL    +  +LV NG P G LQFY  +SDK L  LDI+    I     N+ G   + + K AF   GNW+AT++ R       E ++ +W Y    + FILNT IN PH++ + A+ F    + K E   LVTAS  G  K W    I+ ++ D   +   W  D   S          FS+DGSLLAV F+E+V I+D        +++W  K     ++ K++  C      S +L+ A+++ ++  W+L +  + W  +  V  +  DP S+  AA+          +F PS P P+ +   + ++ K++  +FV    P     E   W    + YF+T++  +       P  E +   S+    E+S     F  I G  R ++      T+ +    LPL      A+ ++L TP+H+LP    +C+ F +SLLLS
Sbjct:   21 RAVFSADSKYIFCVSGDFVKVYSTVTEECVHILHGHRNLVTGIQLNPNNHLQLYSCSLDGTIKLWDYIDGILIKTFIVGCK-LHALFTLAQAEDSVFVI--------VNKEKPDIFQLVSVKLPKSSSQEVEAKELSFVLDYINQSPKCIAFGNEGVYVAAVREFYLSVYFFKKKTTSRFTLSSSRNKKHAKNNFTCVACHPTEDCIASGHMDGKIRLWRNFYD--DKKYTYTCLHWHHDMVMDLAFSVTGTSLLSGGRESVLVEWRDATEKNKEFLPRLGATIEHISVSPAGDLFCTSHSDNKIIIIHR-NLEASAVIQGLVKDRSIFTGLMIDPRTKALVLNGKP-GHLQFYSLQSDKQLYNLDIIQQEYI-----NDYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKLWMYNKKTQGFILNTKINMPHEDCITALCF--CNAEKSEQPTLVTASKDGYFKVW----ILTDDSDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWD--------SVTWELKCTFCQRAGKIRHLCFGRLTCSKYLLGATENGILCCWNLLSCALEWNAKLNVRVMEPDPNSENIAAISQSSVGSDLFVFKPSEPRPLYIQKGISRE-KVQWGVFVPRDVPESFTSEAYQWLNRSQFYFLTKSQSLLTFSTKSP-EEKLTPTSKQLLAEESLPTTPFYFILGKHRQQQDEKLNETLENELVQLPLTENI-PAISELLHTPAHVLPSAAFLCSMFVNSLLLS 758

The following BLAST results are available for this feature:

BLAST of TCONS_00010660-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010660-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR75	3.200e-78	28.85	WD repeat-containing protein 75 OS=Homo sapiens GN...	[more]

You are here

TCONS_00010660-protein (polypeptide) - C. hemisphaerica