TCONS_00010350-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010350-protein
Unique NameTCONS_00010350-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010350-protein ID=TCONS_00010350-protein|Name=TCONS_00010350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MRPLTEEETKVVFEKLTKYIGENVKCLIDRPDGLYCFRLHKDRIYYVKED
IMKKATNIGRPNLISLGTCFGKYTKAGNFKLLITALDFLAPYAKYKVWVK
PSSEQSYLYGHNVLKSGLGRITDNTPQYQGVVIYSMGDIPLGFGATARST
QQCRHADASDVVCFHQTDIGEYLRSENTLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005809XLOC_005809Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010350TCONS_00010350Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR016686Ribosomal_synth_fac_NIP7
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 95..170
e-value: 7.0E-9
score: 45.5
IPR002478PUA domainGENE3D2.30.130.10coord: 95..175
e-value: 2.0E-35
score: 120.3
IPR002478PUA domainPROSITEPS50890PUAcoord: 94..170
score: 12.411
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..180
e-value: 3.4E-84
score: 278.7
IPR015947PUA-like domainSUPERFAMILY88697PUA domain-likecoord: 95..170
NoneNo IPR availableSUPERFAMILY88802Pre-PUA domaincoord: 1..94

Blast
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BLAST of TCONS_00010350-protein vs. Swiss-Prot (Human)
Match: NIP7 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.328e-97
Identity = 126/179 (70.39%), Postives = 148/179 (82.68%), Query Frame = 0 
Query:    1 MRPLTEEETKVVFEKLTKYIGENVKCLIDRPDGLYCFRLHKDRIYYVKEDIMKKATNIGRPNLISLGTCFGKYTKAGNFKLLITALDFLAPYAKYKVWVKPSSEQSYLYGHNVLKSGLGRITDNTPQYQGVVIYSMGDIPLGFGATARSTQQCRHADASDVVCFHQTDIGEYLRSENTL 179
            MRPLTEEET+V+FEK+ KYIGEN++ L+DRPDG YCFRLH DR+YYV E IMK A NI    L+SLGTCFGK+TK   F+L +TALD+LAPYAKYKVW+KP +EQS+LYG++VLKSGLGRIT+NT QYQGVV+YSM DIPLGFG  A+STQ CR  D   +V FHQ DIGEY+R E TL
Sbjct:    1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
The following BLAST results are available for this feature:
BLAST of TCONS_00010350-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NIP71.328e-9770.3960S ribosome subunit biogenesis protein NIP7 homol... [more]
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