TCONS_00009534-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009534-protein
Unique NameTCONS_00009534-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009534-protein ID=TCONS_00009534-protein|Name=TCONS_00009534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp
SFEATMAPGMIAIIFTLLSIGMPLVFARAFIPGTYCKIDDVEFHHRNTHI
ISQCTYCTCNETTEEVSCYKWYKGPTESRLQTLCENCTSLPVETDCSYCE
NPSNSSQIVSSGQSLTLALSDDCISCQCTLEGSIKCRYHNSTMCEGLSCD
NYIKYQIPYISCDDGCTDPATGIQKPEGSWITSEGVSCDCLKSHVTCTKF
EFIESYLFLIKCDRCTVQDYKEQFYEKDCLYNGQILKHGKTSPVQIYNIM
GCASCVCFMGEIQCKSTGFYTIGTFPDILNFGFSHTCTNAEECKALEQNN
DIKIFCSRNPALASCTGIYDWKTDYCQLNCSQIGERPSYTLIDKTWCGSL
PELRKSDCDSMCPDRFDYMKEYGSALVSCNSTDQLIWKDQLCDGKQNCIN
GEDEQDCLAYYCPYVYDNFEVLWKSVGAGENFETQCDQIPILATNFSQYG
LKGKVSRSCTKFNYTSEPLWDNLPDCGCTIDGFPKLLTDEEDMTYELMDA
DITLVHQHYNISPSSIQHFNVIMQYLNLTLKMLRHDNSSEGNFVYQTEEW
RRKNYHFIDHMMKSIAVMSQSPRFCVEEQHKQMDYIFLTLIPAYKFNTHG
YKANTVSLMRGLKGIGKEDLLTNKAVEMAKEDFSLRRGKLQMGMDTEGKA
PKIKSPLTTEMASSIKLTTLDTLEEVLSAISIVSLGIGLIAFRLVRNQTM
RLFNHQNLMLSFLLNGLIYKIPLWFISNLPSKSQGGCMAVSVLSYFFTLC
SFSWMMVEGINIVIIMVFVFQWNGNYHKQYTA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005321XLOC_005321Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009534TCONS_00009534Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR001879GPCR_2_extracellular_dom
IPR017981GPCR_2-like
IPR002172LDrepeatLR_classA_rpt
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 739..762
score: 26.27
coord: 703..727
score: 25.69
coord: 672..696
score: 23.46
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 670..781
e-value: 9.2E-12
score: 44.7
NoneNo IPR availableGENE3D4.10.400.10coord: 373..418
e-value: 1.9E-5
score: 24.3
NoneNo IPR availableGENE3D1.20.1070.10coord: 654..782
e-value: 7.3E-7
score: 27.9
IPR001879GPCR, family 2, extracellular hormone receptor domainPROSITEPS50227G_PROTEIN_RECEP_F2_3coord: 397..480
score: 8.595
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 667..782
score: 12.203
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 377..408

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009534-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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