TCONS_00009511-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009511-protein
Unique Name	TCONS_00009511-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	735

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009511-protein ID=TCONS_00009511-protein|Name=TCONS_00009511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=735bp
MAIKAEALVIVIDVSPSMNDVIDESGQTALQKCITAANMILQRKIFTDTK
KHKDEAALILFGTEGANNPLHDQFGEGNYENITISRDLSVIDVEMLKFVN
NDIVAGATGGDFVDALVVALDHLNTKCSGRKMDQKVVLFSTLRHEFNADQ
IQTIIGGMKANNVNLIFVGPENPDDGDGDSDEESGDQQQQQPQQLNRKPL
TEQQMIGVRCIDHVLEEVDGDGISIDDVLPMLSFFELRRKKQVTTFRGTI
DIGSNLKINVYAYTKVKEERPASWKKLSALAEHAANRDTMGVDMQRTYHL
NDTDRTEVEKDNVAQAYRYGKTIVPMTSDDQKSMKMQTTKSCKVLGFTSK
ENVPRALYTRDVCHILTPQPGDEHAAVAFSSLCHALQEKDMVAIVRYVSR
GNTDPKLGFLAPHIKSSYEGLIFIALPFREDMRSYVFPPLNQKKVTEQHD
AAVDNLIDDMKLVENIDIKKDEDSKNNEEQYKPKELLNPVNQRQCQCIQS
RALNDNQDELPDIEAYITRMVRVKPETATRCETSLNSLKNLFPLKEVEQK
KNDVFKDVGNDEKKDEEKSADSASQQKEEFALNDVAGKEQVKKISVTDPV
DDFKNLIENASNEDERAEACRQICAIIMRLVTESFLDQHYQKALCCIRAL
KEYCIKIETPKAFNELYEDLKSTCVGKRRQDFWDFLATNNVDAIHDPTSV
DISNANSDKQPMEVEEEETSVDKESEDADALLDLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005310	XLOC_005310	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009511	TCONS_00009511	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006164	Ku70/Ku80_beta-barrel_dom
IPR014893	Ku_PK_bind
IPR016194	SPOC-like_C_dom
IPR005160	Ku_C
IPR024193	Ku80
IPR002035	VWF_A

Vocabulary: **Biological Process**
Term	Definition
GO:0006303	double-strand break repair via nonhomologous end joining
GO:0000723	telomere maintenance
GO:0006310	DNA recombination

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0016817	hydrolase activity, acting on acid anhydrides
GO:0004003	ATP-dependent DNA helicase activity
GO:0003684	damaged DNA binding
GO:0042162	telomeric DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0043564	Ku70:Ku80 complex
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0043564	Ku70:Ku80 complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016817	hydrolase activity, acting on acid anhydrides
molecular_function	GO:0042162	telomeric DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 721..735
None	No IPR available	GENE3D	1.10.1600.10		coord: 445..550 e-value: 9.3E-22 score: 76.9
None	No IPR available	GENE3D	1.25.40.240		coord: 561..733 e-value: 1.9E-26 score: 92.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 698..735
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 557..579
None	No IPR available	CDD	cd00873	KU80	coord: 243..548 e-value: 9.31263E-88 score: 279.56
IPR006164	Ku70/Ku80 beta-barrel domain	SMART	SM00559	ku_4	coord: 305..443 e-value: 3.6E-30 score: 116.2
IPR006164	Ku70/Ku80 beta-barrel domain	PFAM	PF02735	Ku	coord: 252..448 e-value: 2.8E-47 score: 161.0
IPR014893	Ku, C-terminal	PFAM	PF08785	Ku_PK_bind	coord: 598..701 e-value: 8.5E-25 score: 87.1
IPR014893	Ku, C-terminal	SUPERFAMILY	101420	C-terminal domain of Ku80	coord: 566..699
IPR016194	SPOC-like, C-terminal domain	GENE3D	2.40.290.10		coord: 242..444 e-value: 8.8E-60 score: 201.4
IPR016194	SPOC-like, C-terminal domain	SUPERFAMILY	100939	SPOC domain-like	coord: 242..549
IPR005160	Ku70/Ku80 C-terminal arm	PFAM	PF03730	Ku_C	coord: 480..573 e-value: 1.9E-8 score: 34.8
IPR024193	Ku80	PIRSF	PIRSF016570	Ku80	coord: 1..712 e-value: 4.0E-147 score: 489.3
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 5..215 e-value: 7.6E-32 score: 110.2
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 7..232 score: 8.545
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 6..183

Blast

[Close]

BLAST of TCONS_00009511-protein vs. Swiss-Prot (Human)
Match: XRCC5 (X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3)

HSP 1 Score: 321.627 bits (823), Expect = 4.679e-99
Identity = 241/755 (31.92%), Postives = 389/755 (51.52%), Query Frame = 0

Query:    7 ALVIVIDVSPSMNDVID--ESGQTALQKCITAANMILQRKIFTDTKKHKDEAALILFGTEGANNPLHDQFGEGNYENITISRDLSVIDVEMLKFVNNDIVAGATGGDFVDALVVALDHLNTKCSGRKMDQKVV-LFSTLRHEFNADQIQTIIGGMKANNVNLIFVGPENPDDGDGDSDEESGD-QQQQQPQQLNRKPLTEQQMIGVRCIDHVLEEVDG-DGI----SIDDVLPMLSFFELRRKKQVTTFRGTIDIGSNLKINVYAYTKVKEER-PASWKKLSA--LAEHAANRDTMGVDMQRTYHLNDTDRTEVEKDNVAQAYRYGKTIVPMTSDDQKSMKMQTTKSC-KVLGFTSKENVPRALYTRDVCHILTPQPGDEHAAVAFSSLCHALQEKDMVAIVRYVSRGNTDPKLGFLAPHIKSSYEGLIFIALPFREDMRSYVFPPL-NQKKV--TEQHDAAVDNLIDDMKLVENIDIKKDEDSKNNEEQYKPKELLNPVNQRQCQCIQSRALNDNQDELPDIEAYITRMVRVKPETATRCETSLNSLKNLFPLKEVEQKKNDVFKDVGNDEKKDEEKSADSASQQ-KEEFALNDVAGKEQVKKISVTDPVDDFKNLIENASNEDERAEACRQICAIIMRLVTESFLDQ----HYQKALCCIRALKEYCIKIETPKAFNELYEDLKSTCVGKRRQDFWDFLATNNVDAI----HDPTSVDISNANSDKQPMEVEEEET-SVDKESEDADALLDLL 735
            A+V+ +DV  +M++ I   ES     +K IT   M +QR++F +   +KDE AL+LFGT+G +NPL    G   Y+NIT+ R L + D ++L+ + + I  G+   DF+DAL+V++D +  +  G+K +++ + +F+ L   F+  Q+  II  +K  +++L F  P +    DG  D   G  +          K +TEQQ  G+  +  V+  ++G DG+    S  + L  L  F+ + ++    +   + IGSNL I + AY  + +ER   +W  + A  L +    ++T+       Y LND D TEV K+++ Q +RYG  IVP +  D++ MK ++   C  VLGF     V R  +  +    +     DE AAVA SSL HAL + DMVAIVRY      +P++G   PHIK +YE L+++ LPF ED+R Y+F  L N KK   TE    AVD LID M L      KKDE +   E+ +   ++ NP  QR  QC+  RAL+  ++ LP I+ +I  M+    E  T+ +  L+ +K LFPL E ++K     +++  D  +D   +    ++Q    F+++ +A +  V  +   +P ++F+ L++      E  EA  Q+   I     E FLD     ++ K++ CIRA +E  IK    + FN   + L+     K+   FW+ +  + +  I       +SV    A     P +    +T +V +E  D D LLD++
Sbjct:    9 AVVLCMDVGFTMSNSIPGIESPFEQAKKVIT---MFVQRQVFAE---NKDEIALVLFGTDGTDNPLS---GGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFK-KIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETV-------YCLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHNYECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLA-----KKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHP-REPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAKKLKTEQGGAHFSVSSLA-EGSVTSVGSVNPAENFRVLVKQKKASFE--EASNQLINHI-----EQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDKPSGDTAAVFEEGGDVDDLLDMI 732

The following BLAST results are available for this feature:

BLAST of TCONS_00009511-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009511-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
XRCC5	4.679e-99	31.92	X-ray repair cross-complementing protein 5 OS=Homo...	[more]

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TCONS_00009511-protein (polypeptide) - C. hemisphaerica