TCONS_00009362-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009362-protein
Unique NameTCONS_00009362-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009362-protein ID=TCONS_00009362-protein|Name=TCONS_00009362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
KAFLMNAVWKAWTKIKLSQIIIKNHHFYRYFISSTCNMGIHGLTKLLADN
APSAMKENEMKNYFGRKIAIDASMSIYQFLIAVRAEGSQLTNEAGETTSH
LMGLFYRTIRMLDNGIKPVYVFDGKPPSLKSGELAKRTERREEAQKQLDA
ATEAGDQENVDKFTRRLVKVTPQHNKECKELLTYMGIPYVDAPCEAEAQC
AELVKGDKVYAMGSEDMDSLTFGTNILLRHLTFSEARKMPIQEFHYDKVI
NELEFTKEQFVDLCILLGCDYCESIKGVGPVTAMKLIREHKSIEGVLKHL
ETGNKKYQIPENWLFKEARQLFIEPEVKSAKEVELKWTKPDEDKLVEFMC
KKNGFSEERIRNGAKKILKAKQSSTQGRMDSFFKVIPSNKPAVKRKSEDN
KKTPASKKKAKPGGKFKGK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005244XLOC_005244Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009362TCONS_00009362Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006084XPG/Rad2
IPR006085XPG_DNA_repair_N
IPR006086XPG-I_dom
IPR008918HhH2
IPR029060PIN_domain-like
IPR019974XPG_CS
IPR023426Flap_endonuc
IPR0200455-3_exonuclease_C
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0016788hydrolase activity, acting on ester bonds
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0004518 nuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..154
NoneNo IPR availableGENE3D1.10.150.20coord: 256..325
e-value: 1.6E-29
score: 101.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 369..419
NoneNo IPR availableCDDcd09907H3TH_FEN1-Eukcoord: 258..327
e-value: 2.90013E-40
score: 138.063
IPR006084XPG/Rad2 endonucleasePRINTSPR00853XPGRADSUPERcoord: 203..223
score: 43.75
coord: 260..275
score: 56.05
coord: 65..79
score: 49.38
coord: 118..137
score: 56.88
coord: 182..199
score: 59.72
IPR006085XPG N-terminalSMARTSM00485xpgn3coord: 38..144
e-value: 3.7E-58
score: 209.2
IPR006085XPG N-terminalPFAMPF00752XPG_Ncoord: 38..144
e-value: 1.4E-34
score: 118.5
IPR006086XPG-I domainSMARTSM00484xpgineucoord: 183..255
e-value: 5.3E-28
score: 109.0
IPR006086XPG-I domainPFAMPF00867XPG_Icoord: 184..270
e-value: 1.1E-29
score: 102.6
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 257..290
e-value: 3.1E-15
score: 66.6
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 38..255
e-value: 2.1E-63
score: 213.3
IPR029060PIN domain-likeSUPERFAMILY88723PIN domain-likecoord: 39..270
IPR019974XPG conserved sitePROSITEPS00842XPG_2coord: 186..200
IPR019974XPG conserved sitePROSITEPS00841XPG_1coord: 116..130
IPR023426Flap endonuclease 1HAMAPMF_00614Fencoord: 38..384
score: 141.311
IPR023426Flap endonuclease 1CDDcd09867PIN_FEN1coord: 41..383
e-value: 7.15608E-154
score: 438.091
IPR0200455'-3' exonuclease, C-terminal domainSUPERFAMILY478075' to 3' exonuclease, C-terminal subdomaincoord: 255..390

Blast
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BLAST of TCONS_00009362-protein vs. Swiss-Prot (Human)
Match: FEN1 (Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1)

HSP 1 Score: 493.812 bits (1270), Expect = 3.880e-175
Identity = 245/380 (64.47%), Postives = 301/380 (79.21%), Query Frame = 0 
Query:   38 MGIHGLTKLLADNAPSAMKENEMKNYFGRKIAIDASMSIYQFLIAVRAEGSQLTNEAGETTSHLMGLFYRTIRMLDNGIKPVYVFDGKPPSLKSGELAKRTERREEAQKQLDAATEAGDQENVDKFTRRLVKVTPQHNKECKELLTYMGIPYVDAPCEAEAQCAELVKGDKVYAMGSEDMDSLTFGTNILLRHLTFSEARKMPIQEFHYDKVINELEFTKEQFVDLCILLGCDYCESIKGVGPVTAMKLIREHKSIEGVLKHLETGNKKYQIPENWLFKEARQLFIEPEVKSAKEVELKWTKPDEDKLVEFMCKKNGFSEERIRNGAKKILKAKQSSTQGRMDSFFKVIPSNKPAVKRKSEDNKKTPASKKKAKPGGKFK 417
            MGI GL KL+AD APSA++EN++K+YFGRK+AIDASMSIYQFLIAVR  G  L NE GETTSHLMG+FYRTIRM++NGIKPVYVFDGKPP LKSGELAKR+ERR EA+KQL  A  AG ++ V+KFT+RLVKVT QHN ECK LL+ MGIPY+DAP EAEA CA LVK  KVYA  +EDMD LTFG+ +L+RHLT SEA+K+PIQEFH  +++ EL   +EQFVDLCILLG DYCESI+G+GP  A+ LI++HKSIE +++ L+    KY +PENWL KEA QLF+EPEV   + VELKW++P+E++L++FMC +  FSEERIR+G K++ K++Q STQGR+D FFKV  S   A KRK  + K +   K K    GKFK
Sbjct:    1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPN--KYPVPENWLHKEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSA-KRKEPEPKGSTKKKAKTGAAGKFK 377
The following BLAST results are available for this feature:
BLAST of TCONS_00009362-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FEN13.880e-17564.47Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 S... [more]
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