TCONS_00009006-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009006-protein
Unique NameTCONS_00009006-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009006-protein ID=TCONS_00009006-protein|Name=TCONS_00009006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2246bp
MRVLQPSKNHNQSSVSDKSVADKSVFDFPDDTSDDAPRLITRRKNLSRSK
MKKRSTEKTKEKENNTLNPPLTLSLSGNNSICPICRFQFSEDESEESKAI
HISKCSNGDPSMHSKMVPQVTDRPSSSKMTSNTMKPSYSKDTASENSCPV
CGSVFDGDSSAKEREIHINKCLDLSANNGQSLLLEQTESDELLARNLQQG
DTTGPFTEALESCQVCLKDLGKLSVGQRMKHLNTCYDRVEIAEGKSTKRK
NPTRRAKTTQSKRGAKVPRKQCPICKSEQAESKFSAHFKKCAGKHKVTPY
QLQKIIQEHQIELDSEGITTTTQRTKAPASSTLVKPSEVNLLDQTVVQEH
KRLIDKVHIESGRPSTPALPTSSITSRPNSDQVTKNTQDQPSKPLKVFTD
NKAKPTPHCRLWTLSAYTMDTLNSVFLVCNLHPVISDVGFSEKTHIKMDT
ESIVSPQSNEDNTLQNKATKDVSFTATQFEKLDVLLDMVATDDVKENETI
KDGFIVDDVDRKIEALKEEQSPQKILSSYHSLVASPVCSDFTFLCGDEVS
KEEIPAHQIILIARCPHLKKIILENKETQMELVDQSVASLKACLSFIYTG
HLFEEERFTKEELEMIIKLSERFELETLQAYSKLVYSKYKATCNNLSPFE
TNKNADQKMETDLASKNEKDESNFNDLVSSFWQDNDLDADIEASDTEKNE
NEFSDNEINELRGIFQSQTVSKRLNASQGIKESTSVRSERQTEKSKKVSV
KDKARPLKTAIVQSDRLSEVSQLSDNAPDEFFFVPDINKTIERSRCSTDE
NQTSREIDSGLLGESPKKRLIPSVTGESVGANFYIAKSLSNKSSYKSSLE
VLATDSPKPDLSVGSSKPFIEEYRSSYGSTNADTEPISDATYQAALLEGH
SAFSYPLVTPTLKETSSISKRGVKKGDSPGNRKQNAGNSSSISDKKKNDS
LSKNQNNKRDSFNQIDRKDDSLNSDTKRKDDKLLSRIEIPRGEDSLDKNA
EKESELEKSNSRDKSNTDLFSSSEKIKEKKNQRTSGPVSVITVPNDEPEV
IHIDKASQGKTLCEEVTVVGSMYFTNDKDYQTFVAKKSKTTSLEQSNKSL
DPQMTILSSSSRVEQRTILINRDTTTTTSSETEVEDLHKQDRNIGMASLE
DLFPASTIDDENIPQLQKNRKTDSSVLSNNIDRTADITPQPFSCDTPMPF
SVETPCFNQPEDSKIDEDGYLSDNSLGDIEIPGLTSVNMTSIAIDDGSSA
KSKKKHESENTNSDELENTLVHQKNENEKLPDFEITYSKQNTSLDRTNVI
LVDDSTNKDDVIELPSNIAAVETSVERSPCVTSLKKMDTSTPHTSNEGAT
KRHFLKLRQRLHADSPIGRTIEEPGNKVDQAETKSKDLDDEPIIISHSPV
NKPTTLLVETESIYKVVPSSTKRKADSSTESLSSACESNTFGELLSSQQR
RYRKRPRKTTSTSSKSIKATPPMRKITVEETSPSSEDEKVNDSDTALFNS
SLHKKSPFIGSKRTSPGKGNSGLWLSTLKSPTSTSRVSASTAKSPFSRKK
TPAASKPRRSTRQKKKDQVRNADFKRMLAEASHRDDSDTELSESTSRPLL
KPLENEDKEKCQNKKTIISMSDVSSDYGDKEIVKKKAKKKSTIISDLSSD
TGDVTIIEESQASDDGDNISTEKSEKGALRIVENSLDIFEVNGINKANNT
LLEKSVNYSSDENKIIDLDSVEVNPVDENREINAPYYGDNDSRYDIGNMV
DGGMDIPYHGDNSHIYEDNDTTCKDDNLNNEGHSKSNVDNTADKDNASRY
EGDNASRYTGGNTTDGGVDVPYVDDDMYFMEDGGYNSFVLEMPATDTSLQ
TSGDKSSSSKFYEKSESSFVDLVKGQEKSDSLTGASIGRSDKDVKLGHLE
SGNEGKGRSGNKTQTSDGSISFEKWPSGISLPDDAEIAGQSSKHAKTPQD
KRTMRPQSDFQTPKNPVSRLKHTDPQSDVSVDEEFETPQQKPQDKEACKN
FRPGIGLHPETNQAITPMPDYAQYPTPDLKEKMKTFAIRENSSKNKMVAK
MQEIYKYQHEFSHWQGEPPVKETRKRKPKTTTSGKSSESDIGATTTSETS
TKKSKTFAPVCSVIDENGVEVIPPAKETKKNNKKPKKQIVTEDEMFLYIQ
ADSQLYQKILSYTPIELGEIIEVIEKATTSTINKNMLEQFVDRQCICLKK
ETVASSDGSTQQTRGRGRQNKRPKKDTTGASSDQPKGRGRGRVKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005039XLOC_005039Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009006TCONS_00009006Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR018574Structure-sp_endonuc_su_Slx4
IPR013083Znf_RING/FYVE/PHD
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:00171085'-flap endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0033557Slx1-Slx4 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0033557 Slx1-Slx4 complex
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2244..2246
NoneNo IPR availableCOILSCoilCoilcoord: 1256..1276
NoneNo IPR availableGENE3D3.30.710.10coord: 508..631
e-value: 3.6E-18
score: 65.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 994..1042
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1367..1387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2065..2102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 725..753
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1417..1492
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 358..400
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2204..2246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1771..1819
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 914..978
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1246..1277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1505..1614
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1847..1997
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 539..640
e-value: 6.4E-6
score: 35.7
IPR000210BTB/POZ domainPFAMPF00651BTBcoord: 534..629
e-value: 4.1E-10
score: 39.8
IPR000210BTB/POZ domainPROSITEPS50097BTBcoord: 539..606
score: 11.502
IPR018574Structure-specific endonuclease subunit Slx4PFAMPF09494Slx4coord: 2146..2198
e-value: 2.5E-9
score: 36.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 77..154
e-value: 0.1
score: 11.7
coord: 155..291
e-value: 0.041
score: 13.0
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 520..630

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009006-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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