TCONS_00008843-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008843-protein
Unique NameTCONS_00008843-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008843-protein ID=TCONS_00008843-protein|Name=TCONS_00008843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MVKGNETQTQRRQINPIKMLGSVQISGEELGDIETNDICSSLRQNSIRLL
SIRGCKLHDKNYRQIMESLKENSSLSHLNLNLGVVDSKERVIWLSEGLKN
NTGIETLLLHGNPIRDEGLSILVPALEKHQGISNLDLGDCLIGDDGLAAL
CGLAKPSNKKNSSLLQLTLTGNRDITQSGWAQLAMALAYCTNLNKLYLDY
NNIGDFGAGLFAVSLSAAKSLEYIDFEGCGITDAGAELLCDAIESYNITL
HDLNLAENDVSEEIIKELKECLQENKTHKYSP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004963XLOC_004963Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008843TCONS_00008843Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 129..155
e-value: 13.0
score: 9.2
coord: 44..71
e-value: 16.0
score: 8.7
coord: 101..128
e-value: 2.4
score: 14.5
coord: 247..274
e-value: 4.8
score: 12.4
coord: 161..189
e-value: 31.0
score: 6.6
coord: 218..245
e-value: 0.01
score: 25.1
coord: 190..217
e-value: 2.8
score: 14.0
NoneNo IPR availableGENE3D3.40.50.10480coord: 13..89
e-value: 5.0E-5
score: 22.5
NoneNo IPR availableGENE3D3.40.50.2000coord: 207..281
e-value: 3.8E-17
score: 62.2
coord: 165..206
e-value: 3.1E-10
score: 39.6
coord: 90..164
e-value: 1.1E-13
score: 50.9
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 20..276
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 134..151
e-value: 0.016
score: 15.1
coord: 220..240
e-value: 0.017
score: 15.0
coord: 189..208
e-value: 0.24
score: 11.5

Blast
[Close]
BLAST of TCONS_00008843-protein vs. Swiss-Prot (Human)
Match: LRC73 (Leucine-rich repeat-containing protein 73 OS=Homo sapiens GN=LRRC73 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 4.365e-70
Identity = 114/251 (45.42%), Postives = 171/251 (68.13%), Query Frame = 0 
Query:   22 SVQISGEELGDIETNDICSSLRQNSIRLLSIRGCKLHDKNYRQIMESLKENSSLSHLNLNLGVVDSKERVIWLSEGLKNNTGIETLLLHGNPIRDEGLSILVPALEKHQGISNLDLGDCLIGDDGLAALCGLAKPSNKKNSSLLQLTLTGNRDITQSGWAQLAMALAYCTNLNKLYLDYNNIGDFGAGLFAVSLSAAKSLEYIDFEGCGITDAGAELLCDAIESYNITLHDLNLAENDVSEEIIKELKECL 272
            S+QISGE L   E  DIC  LR N++RLLS+RGC+L D+++ +I  +L   +SL+ LNLNLGVV S  R+  L+E L+ N  I++L LHG+P+ D GL++L PAL  H  +  LDLGDC++GD+ +  +CGL  P   K S L +LTL+ N  IT  GW++LA+A+A+ + +  L LDYN +GD  AG+ AV+++++++LE +D EG G+T+  A+ L D +E+Y   L  L LAEN +S E+ +++ + L
Sbjct:    5 SIQISGEPLSGAEVRDICRGLRDNAVRLLSLRGCRLCDRDFGRICRALAGATSLAQLNLNLGVVSSPSRIKQLAEALRTNRSIQSLFLHGSPLTDAGLALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPDGAK-SGLKELTLSANPGITPKGWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEGTGLTNQSAQTLLDMVENYPTALRSLVLAENSISPELQQQICDLL 254
The following BLAST results are available for this feature:
BLAST of TCONS_00008843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC734.365e-7045.42Leucine-rich repeat-containing protein 73 OS=Homo ... [more]
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