TCONS_00008182-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008182-protein
Unique Name	TCONS_00008182-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	906

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008182-protein ID=TCONS_00008182-protein|Name=TCONS_00008182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=906bp
MNNRLRSSFRKTNELQTKHIKKFKFRGTESNGGVLFSEGFTRRNVNNSAD
NKFLSSKRQSSNRKRKMVSRVDYSRSSSKAPKMDLAEEIQLQIDDQIRMR
EGAMKLMSASSTLNQALETSKNLLTINARILGLMSALQKKKQERVLQEYN
RQRSSSVTESPQDACTGRIAISDMRIPLMWRDNVHFTGKTGDQSYYAFAL
IRCGDQVRDTPLYEITSADTDMYFDLAIPFDDLPPDFKMDFEVYYTVLTS
NEAHGMKAPRSSMNLRNQKKQIQFKAPKFCLAGHVHIGVDDIRSGIISKD
LTMGGKGASGVAVLGDLHEFPVHPLELWGQICFQLAAQPVDMKSDIHKGP
ISIELNSPANKYYCILRQDMLHCWENEEHVITSQPLNSIKLTANTKVSQV
QSAEVNSVKLLVGETVTATLIFDSSTDCFEWKNAIRRQINNILSWKYAFE
EQMYIAEMKKNRLSIPSTASFYDQIKIEEITSIHQSSHAVFNGKGIINEA
FNNPPPSTQTIEQKTPSPSLTNGTNHQPSNDENKENWKQSSCDKKLDNNS
ETVPSSSTTEPPPTEEGQDPAPQGLLLQNGHPPPSTHQDPSTQQDNEKQV
TSDSQVSADEQSMETNVECDDRNDQASPMEIEEVDEDKTEEKTCLDEVSE
TKTGEESNIVEVEESEPPSDVIEDVKEDTENVKTAEPPADQEISEMPNQD
ASSENTIEEKAIVVEEKAIVFGEDEEAEKSNTENEIDIEAEQPATDNDDV
VVETETNVECEEVKPEEKTIENEVDESTNDSTDPDVRQESENSINESIEE
KNKKEQEKSEESLNDNVEVKSDLNDTSETFQNGGENDVSVQNGCQNNETV
DSAIADPPQEGNKVQQKEKNGKELETVKQTPSEEGKTEEQVTAELSNVEP
ENQSTC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004601	XLOC_004601	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008182	TCONS_00008182	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001849	PH_domain
IPR012966	AHD
IPR011993	PH_dom-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 787..815
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 721..906
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 497..706
None	No IPR available	CDD	cd00821	PH	coord: 361..435 e-value: 5.65245E-4 score: 38.2926
IPR001849	Pleckstrin homology domain	SMART	SM00233	PH_update	coord: 340..442 e-value: 0.0031 score: 26.7
IPR012966	Anillin homology domain	PFAM	PF08174	Anillin	coord: 165..292 e-value: 2.8E-23 score: 82.8
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 346..624 e-value: 5.5E-8 score: 32.0
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 354..440

Blast

[Close]

BLAST of TCONS_00008182-protein vs. Swiss-Prot (Human)
Match: RTKN2 (Rhotekin-2 OS=Homo sapiens GN=RTKN2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.340e-40
Identity = 133/499 (26.65%), Postives = 221/499 (44.29%), Query Frame = 0

Query:   77 SSKAPKMDLAE-------EIQLQIDDQIRMREGAMKLMSASSTLNQALETSKNLLTINARILGLMSALQKKKQERVLQEYNRQRSSSVTESPQDACTGRIAISDMRIPLMWRDNVHFTGKTGDQSYYAFALIRCGDQVRDTPLYEITSADTDMYFDLAIPFDDLPPDFKMDFEVYYTV-----LTSNEAHGMKAPRSSMNLRNQKK----------------QIQFKAPKFCLAGHVHIGVDDIRSGIISKDLTMGGKGASGVAVLGDLHEFPVHPLELWGQICFQLAAQPVDMKSDIHKGPIS----IELNSPANKYYCILRQDMLHCWENEEHV------ITSQPLNS-IKLTANTKVSQVQSAEVNSVKLLVGETVTATLIFDSSTDCFEWKNAIRRQINNILSWKYAFEEQMYIAEMKKNR----LSIPSTASFYDQ-----IKIEEITSIHQSSHAVFNGKGIINEAFNNPPPSTQTIEQKTPSPSLTNGTNHQ 527
            S + P + LA         IQ +ID +IRMREG  KL+S S+  +Q L   KNL+  NAR++   S LQK  +E++  +  R          + AC G+IAISD+RIPLMW+D+ HF+ K   + Y  F L + G  V DT +  +    TD+ F+    F++  PDF++  EVY        +T+      K  ++S++    KK                       K+ L  H  + ++       + +L++ G   S               L L+G +C +L AQP  M  D   G ++    +E      + YC+LR   L+C+ + E +          P+N   ++ A  K ++ +    + +  + G+ +T     D+  D  +W  A  +   ++  WK+  EE M I  M   +    L+  +T+ ++D      +K+E +T I Q      NG+ +I +   + PP         P  +L +G NHQ
Sbjct:    5 SLRGPALRLAGLPTQQDCNIQEKIDLEIRMREGIWKLLSLSTQKDQVLHAVKNLMVCNARLMAYTSELQKL-EEQIANQTGRC-DVKFESKERTACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMGANVFDTDVVNVDKTITDICFENVTIFNEAGPDFQIKVEVYSCCTEESSITNTPKKLAKKLKTSISKATGKKISSVLQEEDDEMCLLLSSAVFGVKYNLLAHTTLTLESAEDSFKTHNLSINGNEESSFW------------LPLYGNMCCRLVAQPACMAEDAFAGFLNQQQMVEGLISWRRLYCVLRGGKLYCFYSPEEIEAKVEPALVVPINKETRIRAMDKDAKKRIHNFSVINPVPGQAITQIFAVDNREDLQKWMEAFWQHFFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPP---------PWATLFDG-NHQ 479

The following BLAST results are available for this feature:

BLAST of TCONS_00008182-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008182-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RTKN2	5.340e-40	26.65	Rhotekin-2 OS=Homo sapiens GN=RTKN2 PE=2 SV=1	[more]

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TCONS_00008182-protein (polypeptide) - C. hemisphaerica