TCONS_00007829-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007829-protein
Unique Name	TCONS_00007829-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	852

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007829-protein ID=TCONS_00007829-protein|Name=TCONS_00007829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=852bp
MSDSGGVSTPLLSDSQKEHYHTMSQHLSPIPNSNQNPTVKVITSTPLPSD
LESGTDRDDRPNLSAIDSRFSAGYSSMDDRGTDNELYQSDEDLTAGGRET
HALLQAAVFIEDAIEHRSICHKVDVVSLERYRMYHSKPIRWAKRLVITIL
LSLAFLETPSSLTISSDPRKRLDRYEFPCGVLESIELLCLIVLTADLIFR
FRMVGKKTFKKSNWMIACAVVLFISYIDWLVSLGYVCEETWRMRRLLRPF
FLIQSSSLMKKTVQSIQETVSQILSVLFLMALHLYFFTMLGMVLFSPVDM
YGNKIIPDSHVHPKEKSLDNLHDKNEGRRYFTDLGESIMSLIILLTTANN
PDVMMPAYSDNRFYALYFILFLAIGMYFFMNVLLAVIYNQFKGSFTKSMQ
SSFLRRRVGVRAAFEVLRGMTFYETPLESPSSCVDVFTVKSLIDEVKFSK
KHRYKPYMMEYLENLPGNVVNAKQFQETFDIVFTDSIKKRHPCRTFDRPI
LKQIQALLLHNYFQYFGDFVSFVNVFIVTLELAMKTAFDGHSLLAIFNFC
FIVYYAIEQVLMIYFIGPKRYFSHKNVWFESFVTWLLVILEILCIGFYGG
PFPYLTQKEIMRRSVKYSPMSLYNILRITNMLIIIRLLRIIPSIKPLKMV
ASTLVDLVKNMRAFGGIVILIFYVFGIWGLMLFSGKSPQPPVNATDTSDV
HVAASLNISCGSYRQLEYYANNFDDFAASIVVLWDVLVVNNWFVFLDAYN
QTMKTRWAQLYFVVWWLVSVVICINLFVALVIEAFISQRERRQISEIKRN
KRRKFAQNEETSRHFRVHEWFRSDYQEPTVDEIMKEINKNHYLRKYTRTQ
TL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004442	XLOC_004442	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007829	TCONS_00007829	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 510..792 e-value: 4.4E-24 score: 84.9 coord: 145..392 e-value: 9.5E-28 score: 97.0
None	No IPR available	GENE3D	1.10.287.70		coord: 135..395 e-value: 4.9E-26 score: 91.0 coord: 509..787 e-value: 1.8E-22 score: 79.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 143..298 coord: 327..392
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 741..786 coord: 621..686 coord: 511..594

Blast

[Close]

BLAST of TCONS_00007829-protein vs. Swiss-Prot (Human)
Match: TPC2 (Two pore calcium channel protein 2 OS=Homo sapiens GN=TPCN2 PE=1 SV=2)

HSP 1 Score: 498.819 bits (1283), Expect = 2.313e-165
Identity = 312/759 (41.11%), Postives = 461/759 (60.74%), Query Frame = 0

Query:   95 AGGRETHALLQAAVFIEDAIEHRSICHKVDVVSLERYRMYHSKPIRWAKRLVITILLSLAFLETPSSLTISSDPRKRLDRYEFPCGVLESIELLCLIVLTADLIFRFRMVGKKTFKKSNWMIACAVVLFISYIDWLVSLGYVCEETWRMRRLLRPFFLIQSSSLMKKTVQSIQETVSQILSVLFLMALHLYFFTMLGMVLFSPVDMYGNKIIPDSHVHPKEKSLDNLHDKNEGRRYFTDLGESIMSLIILLTTANNPDVMMPAYSDNRFYALYFILFLAIGMYFFMNVLLAVIYNQFKGSFTKSMQSSFLRRRVGVRAAFEVL-----RGMTFYETPLESPSSCVDVFTVKSLIDEVKFSKKHRYKPYMMEYLENLPGNVVNAKQFQETFDIVFTDSIKKRHPCR-TFDRPILKQIQALLLHNYFQYFGDFVSFVNVFIVTLELAMKT----AFDGHSLLAIFNFCFIVYYAIEQVLMIYFIGPKRYFSHKNVWFESFVTWLLVILEILCIGFYGGPFPYLTQKEIMRRSVKYSPMSLYNILRITNMLIIIRLLRIIPSIKPLKMVASTLVDLVKNMRAFGGIVILIFYVFGIWGLMLFSGKSPQPPVNATDTSDVHVAASLNISCGSYRQLEYYANNFDDFAASIVVLWDVLVVNNWFVFLDAYNQTMKTRWAQLYFVVWWLVSVVICINLFVALVIEAFISQRERRQISEIKRNKRRKFAQNEETSRHFRVHEWFRSDYQEPTVDEIMKEINKNHYL 843
            A  R    + QA VFIEDAI++RSI H+VD  S+  YR Y+S   +      I ++L LAF+ETPSSLT ++D R R   +E PCG+ ES+E+LCL+V  ADL  +  + G   F+K+ W++   VVL +S +DW VSL  VC E  R+RRLLRPFFL+Q+SS+MKKT++ I+ ++ ++ SV  L+A+HL  FTM GM+LF+     G K              D+  D+ E   YF +L ES+ SL++LLTTANNPDVM+PAYS NR YA++FI+F  IG  F MN+L A+IY+QF+G   KS+Q+S  RRR+G RAAFEVL      G  F +     P + + V      + +V+    H  K  MME + +    +++A++FQ+ F+     S+ K HP R  +  P L+  Q L  H YF Y G+ ++  N+  + + L +      A     +L I N  FIVYY +E +L ++ +G + Y S+ +  F+  +T +L++LEI  +  Y  P P         R      +SL+++ R+ NMLI+ R LRIIPS+K + +VAST++ LV+NMRAFGGI+++++YVF I G+ LF G     P N++        A+ +  CGS+ QLEY+ANNFDDFAA++V LW+++VVNNW VFLDAY +     W+++YFV+WWLVS VI +NLF+AL++E F+ + +        R+  +  A   E +    V   FR   +EP  DE+ + ++++ +L
Sbjct:   38 AAARWDLCIDQAVVFIEDAIQYRSINHRVDASSMWLYRRYYSNVCQRTLSFTIFLILFLAFIETPSSLTSTADVRYRAAPWEPPCGLTESVEVLCLLVFAADLSVKGYLFGWAHFQKNLWLLGYLVVLVVSLVDWTVSLSLVCHEPLRIRRLLRPFFLLQNSSMMKKTLKCIRWSLPEMASVGLLLAIHLCLFTMFGMLLFA-----GGK-------------QDDGQDR-ERLTYFQNLPESLTSLLVLLTTANNPDVMIPAYSKNRAYAIFFIVFTVIGSLFLMNLLTAIIYSQFRGYLMKSLQTSLFRRRLGTRAAFEVLSSMVGEGGAFPQAVGVKPQNLLQV------LQKVQLDSSH--KQAMMEKVRSYGSVLLSAEEFQKLFN-ELDRSVVKEHPPRPEYQSPFLQSAQFLFGHYYFDYLGNLIALANLVSICVFLVLDADVLPAERDDFILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLLVLEISTLAVYRLPHPGW-------RPEMVGLLSLWDMTRMLNMLIVFRFLRIIPSMKLMAVVASTVLGLVQNMRAFGGILVVVYYVFAIIGINLFRGVIVALPGNSS-----LAPANGSAPCGSFEQLEYWANNFDDFAAALVTLWNLMVVNNWQVFLDAYRR-YSGPWSKIYFVLWWLVSSVIWVNLFLALILENFLHKWD-------PRSHLQPLAGTPEATYQMTVELLFRDILEEPGEDELTERLSQHPHL 748

The following BLAST results are available for this feature:

BLAST of TCONS_00007829-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007829-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TPC2	2.313e-165	41.11	Two pore calcium channel protein 2 OS=Homo sapiens...	[more]

You are here

TCONS_00007829-protein (polypeptide) - C. hemisphaerica