TCONS_00007300-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007300-protein
Unique Name	TCONS_00007300-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	409

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007300-protein ID=TCONS_00007300-protein|Name=TCONS_00007300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MGEEKMLLLQTKRLTSLGKRTKILDAQSNPQKSDNDKKMSNNSTATTTQS
PFLDVFTQREIYLMYIGYVIITIFGISSNLAVCFVILKYRHLRVIVNILI
LNLAISDIVACLSVYPFIFVDIPATGLRGRSANVLCGITEGLSVFFVVAT
VSLLTLSVLSISRYIVINHPLRLNWRLKKGSIKYIFTIIWITSAALLIPS
SVSFSYNEEKQFCFREWAPGIHSFTYFMFTGLLGFFIPIFSLTFTYCTSV
YTLWFKRSNVSNTRFSGSSQPPGNMRVKKRVSILLGLLIVVYLLCWMPFA
IYWLLSAGIGYYDQSDEKLIEGIRFNRITVFIALCNTVLNPIVYAFTNAH
LRTAFWYCLQCKKLNAVAQRTSMTGGPTLVSYTAARRHTIHPGSDIELRT
MGRPREMTL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004098	XLOC_004098	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007300	TCONS_00007300	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 145..167 score: 30.41 coord: 181..202 score: 18.71 coord: 63..87 score: 20.78 coord: 96..117 score: 31.87 coord: 281..305 score: 27.32 coord: 227..250 score: 19.1 coord: 326..352 score: 28.84
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 79..344 e-value: 2.8E-33 score: 115.2
None	No IPR available	GENE3D	1.20.1070.10		coord: 30..392 e-value: 2.7E-55 score: 187.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..46
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 39..369
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 78..344 score: 33.05

Blast

[Close]

BLAST of TCONS_00007300-protein vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.473e-26
Identity = 83/324 (25.62%), Postives = 146/324 (45.06%), Query Frame = 0

Query:   69 VIITIFGISSNLAVCFVILKYRHLRVIVNILILNLAISDIVACLSVYPFIFVDIPATGLRGRSANVLCGITEGLSVFFVVATV---SLLTLSVLSISRYIVINHPLRLNWRLKKGSIKYIFTIIWITSAALLIPS--------SVSFSYNEEKQFCFREWAPGIHSFTYFMFTGLLGFFIPIFSLTFTYCTSVYTLWFKR--SNVSNTRFSGSSQPPGNMRVKKRVSILLGLLIVVYLLCWMPFAIYWLLSAGIGYYDQSDEKLIEGIRFNRITVFIALCNTVLNPIVYAFTNAHLR----TAFWYCLQCKKLNAVAQRTSMTG 375
            V+I    +  N  V +V+ + + +R + NI I +LA+SD++         F  IP T L+  S N L G      V FV +T     +LT++ +++ R+  + HP ++ W+        +  ++W+ +  +  P            F Y +E   C  EW   +H   Y  F  ++ F +P+  +   Y    Y LW K+   + S  R     +     R KKR  I++  ++ ++ +CW PF +  ++     +  + D+  I+ I    I   I   N++ NPIVYAF N + +    +A  YC+  K  +  AQR   +G
Sbjct:   53 VLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLL-------ITFFCIPVTMLQNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRRAFTMLGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQKIYTTFILVILFLLPLMVMLILYSKIGYELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIF--AIVQIIGFSNSICNPIVYAFMNENFKKNVLSAVCYCIVNKTFSP-AQRHGNSG 366

The following BLAST results are available for this feature:

BLAST of TCONS_00007300-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007300-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
QRFPR	2.473e-26	25.62	Pyroglutamylated RFamide peptide receptor OS=Homo ...	[more]

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TCONS_00007300-protein (polypeptide) - C. hemisphaerica