TCONS_00006770-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006770-protein
Unique Name	TCONS_00006770-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	896

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006770-protein ID=TCONS_00006770-protein|Name=TCONS_00006770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=896bp
MVSTLKCVQALKQCQRLKTNIHGKSIEVADVLSDEFIQRQNLENLYKSVL
LSDVQYALDNKVELELWNSVFKEHIDTFRLKIKEKKQNNEKNDIQAKLSL
FLDVSTGFYFQLLQEFCDTYDLDLPYHGKASQLGILSKNKKKNDTTKPKI
NACLYVCQDCLVHLGDLARYRNDMQQAQTFYTLASKVLPGNGQPYNQLAI
LSSAKSNNLQAVFYYYKSISVPNPFPAASSNLQKTLSQMCAKQNYNIFTK
TSGLTVAEYLELFLNFTGSVYMMQDISKINALKDQLIQDLKDVLLELTQI
QLVHLMSVSLFNLQRCKHRNYEADNLSEEDTSLWHVSLLFCVQFFQIMLE
YTSEMIVNRFQLIEMKCLPAIKLFTDWIVCSGSNTLAQEAFQENLKLYHD
VCSFANQLLTIQTKKEKSFLPLMEDWEMHGVNPFRKIHRRYDYRIQPVEV
TIAQVWNIRVSRLFHFLDWLCQQEHVISFLSKAEQNGKVEYICKQSADVI
TPPSSTKKQPTQKKQQPTQQNIKVLQKPKTNGQGNQNVNENVFPQKSRSL
FRTESEEIGSLPGVKGPVQSYSLFDAIWSRQNTPPHEADNLSVGSPSMPL
TSVGMFKESRPTPDIYPSSGIHNHQQQEAVARSLETPTFDISAQLAGNLS
KSAPQHSPEFRQMNEQMRGFQISKPPPQQTQPSAPQVLMQQQVNNAQQPP
SMRSGMWFKSQPVHADNMLAQHPAQHRPPPAQQRGVQQQGGTFNNALSFG
SIVMETXQQQGGTFNNALSFGSIVMETSPMHNNFITPKPPQPAQHFVSQQ
FMPQAPHQSNFGAIGQNIRQAPPPQQSMAPQSALMQQPFGGSPAVAQRSW
NGPPPGIPDPMGESRSIWTSTFGMGQNEISPLEQLIKDQRRHQQPR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003784	XLOC_003784	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006770	TCONS_00006770	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018834	DNA/RNA-bd_Est1-type
IPR011990	TPR-like_helical_dom
IPR019458	EST1

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018834	DNA/RNA-binding domain, Est1-type	PFAM	PF10373	EST1_DNA_bind	coord: 177..436 e-value: 1.1E-31 score: 110.2
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 140..418 e-value: 1.4E-6 score: 27.6
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 8..473
IPR019458	Telomerase activating protein Est1	PFAM	PF10374	EST1	coord: 61..173 e-value: 2.5E-23 score: 83.1

Blast

[Close]

BLAST of TCONS_00006770-protein vs. Swiss-Prot (Human)
Match: SMG7 (Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 3.293e-78
Identity = 159/451 (35.25%), Postives = 260/451 (57.65%), Query Frame = 0

Query:    4 TLKCVQALKQCQRLKTNIHGKSIEVADVLSDEFIQRQNLENLYKSVLLSDVQYALDNKVELELWNSVFKEHIDTFRLKIKEKKQNNEKNDIQAKLSLFLDVSTGFYFQLLQEFCDTYDLDLPYHGKASQLGILS-KNKKKNDTTKPKINACLYVCQDCLVHLGDLARYRNDMQQAQTFYTLASKVLPGNGQPYNQLAILSSAKSNNLQAVFYYYKSISVPNPFPAASSNLQKTLSQMCAKQNYNIFTKTSGLTVAEYLELFLNFTGSVYMMQDISKINALKDQLIQDLKDVLLE--LTQIQLVHLMSVSLFNLQRCKHRNYEAD--NLSEEDTSLWHVSLLFCVQFFQIMLE-----YTSEMIVNRFQLIEMKCLPAIKLFTDWIVCSGSNTLAQEAFQENLKLYHDVCSFANQLLTIQTKKEK-SFLPLMEDWEMHGVNPFRKIHRRYDY 443
            +L+  Q L+Q + LK ++    +  A+V    +  RQ L++LY+ +L++D++YALD KVE +LWN  FK  I T + + K +   N ++++QA LSLFL+ ++GFY QLLQE C  +++DLP   K+SQLGI+S K    +   KP+ ++C Y+CQ CLVHLGD+ARYRN   QA+++Y  A++++P NGQPYNQLAIL+S+K ++L  +FYY +SI+V  PFPAAS+NLQK LS+    ++  + TK     V+++++ F+ F G VY+ + + K++ L+++L +  K +L +      QLVH+  ++LF L   +  + E +    S+++   W   L   + F  I+ +      + E   N +       LPA+K+  DW+         +    E   ++  + S  N     +      S  PL E++E+ G    R   R  D+
Sbjct:    2 SLQSAQYLRQAEVLKADMTDSKLGPAEV----WTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPN-RSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD-EVKTK---WGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP------LPAVKVSMDWLRLR-PRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDF 436

The following BLAST results are available for this feature:

BLAST of TCONS_00006770-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006770-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMG7	3.293e-78	35.25	Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2	[more]

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TCONS_00006770-protein (polypeptide) - C. hemisphaerica