TCONS_00006770-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006770-protein
Unique NameTCONS_00006770-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006770-protein ID=TCONS_00006770-protein|Name=TCONS_00006770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=896bp
MVSTLKCVQALKQCQRLKTNIHGKSIEVADVLSDEFIQRQNLENLYKSVL
LSDVQYALDNKVELELWNSVFKEHIDTFRLKIKEKKQNNEKNDIQAKLSL
FLDVSTGFYFQLLQEFCDTYDLDLPYHGKASQLGILSKNKKKNDTTKPKI
NACLYVCQDCLVHLGDLARYRNDMQQAQTFYTLASKVLPGNGQPYNQLAI
LSSAKSNNLQAVFYYYKSISVPNPFPAASSNLQKTLSQMCAKQNYNIFTK
TSGLTVAEYLELFLNFTGSVYMMQDISKINALKDQLIQDLKDVLLELTQI
QLVHLMSVSLFNLQRCKHRNYEADNLSEEDTSLWHVSLLFCVQFFQIMLE
YTSEMIVNRFQLIEMKCLPAIKLFTDWIVCSGSNTLAQEAFQENLKLYHD
VCSFANQLLTIQTKKEKSFLPLMEDWEMHGVNPFRKIHRRYDYRIQPVEV
TIAQVWNIRVSRLFHFLDWLCQQEHVISFLSKAEQNGKVEYICKQSADVI
TPPSSTKKQPTQKKQQPTQQNIKVLQKPKTNGQGNQNVNENVFPQKSRSL
FRTESEEIGSLPGVKGPVQSYSLFDAIWSRQNTPPHEADNLSVGSPSMPL
TSVGMFKESRPTPDIYPSSGIHNHQQQEAVARSLETPTFDISAQLAGNLS
KSAPQHSPEFRQMNEQMRGFQISKPPPQQTQPSAPQVLMQQQVNNAQQPP
SMRSGMWFKSQPVHADNMLAQHPAQHRPPPAQQRGVQQQGGTFNNALSFG
SIVMETXQQQGGTFNNALSFGSIVMETSPMHNNFITPKPPQPAQHFVSQQ
FMPQAPHQSNFGAIGQNIRQAPPPQQSMAPQSALMQQPFGGSPAVAQRSW
NGPPPGIPDPMGESRSIWTSTFGMGQNEISPLEQLIKDQRRHQQPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003784XLOC_003784Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006770TCONS_00006770Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018834DNA/RNA-bd_Est1-type
IPR011990TPR-like_helical_dom
IPR019458EST1
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018834DNA/RNA-binding domain, Est1-typePFAMPF10373EST1_DNA_bindcoord: 177..436
e-value: 1.1E-31
score: 110.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 140..418
e-value: 1.4E-6
score: 27.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 8..473
IPR019458Telomerase activating protein Est1PFAMPF10374EST1coord: 61..173
e-value: 2.5E-23
score: 83.1

Blast
BLAST of TCONS_00006770-protein vs. Swiss-Prot (Human)
Match: SMG7 (Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 3.293e-78
Identity = 159/451 (35.25%), Postives = 260/451 (57.65%), Query Frame = 0
Query:    4 TLKCVQALKQCQRLKTNIHGKSIEVADVLSDEFIQRQNLENLYKSVLLSDVQYALDNKVELELWNSVFKEHIDTFRLKIKEKKQNNEKNDIQAKLSLFLDVSTGFYFQLLQEFCDTYDLDLPYHGKASQLGILS-KNKKKNDTTKPKINACLYVCQDCLVHLGDLARYRNDMQQAQTFYTLASKVLPGNGQPYNQLAILSSAKSNNLQAVFYYYKSISVPNPFPAASSNLQKTLSQMCAKQNYNIFTKTSGLTVAEYLELFLNFTGSVYMMQDISKINALKDQLIQDLKDVLLE--LTQIQLVHLMSVSLFNLQRCKHRNYEAD--NLSEEDTSLWHVSLLFCVQFFQIMLE-----YTSEMIVNRFQLIEMKCLPAIKLFTDWIVCSGSNTLAQEAFQENLKLYHDVCSFANQLLTIQTKKEK-SFLPLMEDWEMHGVNPFRKIHRRYDY 443
            +L+  Q L+Q + LK ++    +  A+V    +  RQ L++LY+ +L++D++YALD KVE +LWN  FK  I T + + K +   N ++++QA LSLFL+ ++GFY QLLQE C  +++DLP   K+SQLGI+S K    +   KP+ ++C Y+CQ CLVHLGD+ARYRN   QA+++Y  A++++P NGQPYNQLAIL+S+K ++L  +FYY +SI+V  PFPAAS+NLQK LS+    ++  + TK     V+++++ F+ F G VY+ + + K++ L+++L +  K +L +      QLVH+  ++LF L   +  + E +    S+++   W   L   + F  I+ +      + E   N +       LPA+K+  DW+         +    E   ++  + S  N     +      S  PL E++E+ G    R   R  D+
Sbjct:    2 SLQSAQYLRQAEVLKADMTDSKLGPAEV----WTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPN-RSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD-EVKTK---WGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP------LPAVKVSMDWLRLR-PRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDF 436          
The following BLAST results are available for this feature:
BLAST of TCONS_00006770-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMG73.293e-7835.25Protein SMG7 OS=Homo sapiens GN=SMG7 PE=1 SV=2[more]
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