TCONS_00006334-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006334-protein
Unique NameTCONS_00006334-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006334-protein ID=TCONS_00006334-protein|Name=TCONS_00006334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MKMAQNLSKKIKITKFLLLSYIILFFLLGSALLVLAMESRFGKQDYITVT
EKVSYITGYMAANTFCIIIGVIMVIVSFFGCCGVIAEHSIMVLVLFVFMA
IIFIFEMAICIYGFAKSDQIKDRLESTYLKNIQALYTNDTWSQHAAAIDN
FQRNKQCCGYHGIEDWDDSHFMKENGHYPISCCKELNCSTEAVRSYKKAH
FYQKGCFKEVVKWLTRNMEIIGIVNLTFGILQIFGMVLTMILYCFVKDML
VITS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003609XLOC_003609Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006334TCONS_00006334Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 86..114
score: 23.7
coord: 59..85
score: 30.34
coord: 220..246
score: 29.47
coord: 16..39
score: 24.73
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 5..251
e-value: 1.1E-46
score: 156.9
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 15..244
e-value: 1.5E-43
score: 149.1
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 114..218
e-value: 8.9E-16
score: 57.6
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 114..218

Blast
[Close]
BLAST of TCONS_00006334-protein vs. Swiss-Prot (Human)
Match: TSN7 (Tetraspanin-7 OS=Homo sapiens GN=TSPAN7 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.631e-25
Identity = 68/247 (27.53%), Postives = 114/247 (46.15%), Query Frame = 0 
Query:    4 AQNLSKKIKIT--KFLLLSYIILFFLLGSALLVLAMESRFGKQDYITVTEKVSYITGYMAANTFCIIIGVIMVIVSFFGCCGVIAEHSIMVLVLFVFMAIIFIFEMAICIYGFAKSDQIKDRLESTYLKNIQALYTNDTWSQHAAAIDNFQRNKQCCGYHGIEDWDDSHFMKENGHYPISCCKELNCSTEAVRSYKKA--HFYQKGCFKEVVKWLTRNMEIIGIVNLTFGILQIFGMVLTMILYCFV 246
            ++ +  K  IT  K LL+ Y  +F++ G  LL + +  +     YI++  + S    Y+   T     G  +V+   FGC         M+ +  +F++++F+ E+   I GF    +IKD    TY   +Q    ND   + + A+D+ QR+  CCG     +W  S +  E+G  P  C  E +C+ + + +   A     QKGC+  V  ++  NM II  V       Q+ GM+L   L  F+
Sbjct:    3 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGT-----GTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGND---ERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241
The following BLAST results are available for this feature:
BLAST of TCONS_00006334-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN72.631e-2527.53Tetraspanin-7 OS=Homo sapiens GN=TSPAN7 PE=1 SV=2[more]
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