TCONS_00006300-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006300-protein
Unique NameTCONS_00006300-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006300-protein ID=TCONS_00006300-protein|Name=TCONS_00006300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MSDTYDSAYRGLRQNTSTAVGQIATTLYNGLQGATNNNTTYHNTSLHSNC
GASSAAALASNYLSHTDYMSPTSHLTPKQDSTTAHHLSQSLTNSATNLPY
YDSMSANTSNTTGFGVSSGKYSPHSYRSSSSSSYSHYQNQNNNQLTNNHS
LNGGASTTTDLSSNTHPYYSSFIPPPPTTRSSYPTSSFAHSPYSLDSDFC
GRTARYGSNSPGSLHNQYLDQSLLHQVTAPGMFYPYIRPHPGSNYIMTCM
WIEQHGFAKLKPCGRQFTTMQDIVNHLNEEHVQTADTGNGLYVCQWQNCP
RNGLPFKAKYKLVNHLRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHT
DHGTGNASLLTAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003595XLOC_003595Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006300TCONS_00006300Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 292..319
e-value: 3.6
score: 16.6
coord: 325..349
e-value: 5.6E-4
score: 29.2
coord: 263..281
e-value: 320.0
score: 0.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 327..349
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 292..324
score: 11.157
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 325..354
score: 12.591
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 310..351
NoneNo IPR availableGENE3D3.30.160.60coord: 247..284
e-value: 1.6E-5
score: 24.4
coord: 292..315
e-value: 8.3E-10
score: 38.0
NoneNo IPR availableGENE3D2.20.28.10coord: 337..353
e-value: 0.019
score: 14.4
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 325..349
e-value: 1.2E-4
score: 22.2
NoneNo IPR availableGENE3D3.30.160.60coord: 316..336
e-value: 2.9E-14
score: 52.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..187

Blast
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BLAST of TCONS_00006300-protein vs. Swiss-Prot (Human)
Match: ZIC4 (Zinc finger protein ZIC 4 OS=Homo sapiens GN=ZIC4 PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 8.285e-44
Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 0 
Query:  229 APGMFYPYIRPHPGSNYIMTCMWIEQHGFAKLKPCGRQFTTMQDIVNHLNEEHVQTADTGNGLYVCQWQNCPRNGLPFKAKYKLVNHLRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHT 350
             PG F+ Y+R  P    ++ C W+   G A    C + F+TM ++V H+  EHV   +  N  ++C W+ CPR G PFKAKYKLVNH+RVHTGEKPFPCPFPGCGK+FARSENLKIHKRTHT
Sbjct:  112 GPGAFFRYMR-QPIKQELI-CKWLAADGTATPSLCSKTFSTMHELVTHVTVEHVGGPEQAN--HICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 229
The following BLAST results are available for this feature:
BLAST of TCONS_00006300-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZIC48.285e-4457.38Zinc finger protein ZIC 4 OS=Homo sapiens GN=ZIC4 ... [more]
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