TCONS_00006256-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006256-protein
Unique NameTCONS_00006256-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006256-protein ID=TCONS_00006256-protein|Name=TCONS_00006256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MYSASAAVGNSLNCSQDDKDDKWRKYSSSTEIDHRNFRKEMVQNGPSITK
HHSITTDLSGDQSIPDRVVVNVSGLKFETLSETLEQYPESLLGNEDKRKA
YFDEARNEYFFDRNRPAFDAILFYYQSGGKLLRPPNVPMDVFADEIRFYE
LGDEILQRVEREEGYIEEEEPIFPEREWQRKIWELFEYPDTSIGARIVAV
ISVCIITISIVTFCIETLPQFRYEKFNCTKMGNGSTVCQEREIRDDKAMP
WFGIESACIVWFTFEYIMRFISSPQKLVFARSFLNLIDVIAIIPYYITLP
MKTSNVSSLGVLRVIRLVRVFRIFKLSRHSRGLQILGHTLRASLRELGLL
IFFLLIGVILFSSAVYYAEGGEKKTFKSIPDAFWWAVVTMTTVGYGDMKP
ESAWGKIVGSLCAISGVLTIALPVPVIVSNFNYFYHRENELRAAEASRKE
KEKKEQEQRQKEQKEQEEGEAEEETLLVDGKTKLPNDTRSNGLHAINRND
EKELTLSKEDINDNKTSGHHFIENNHPDIRLNINGEEEHDQLLVKTFKGS
KENINFETGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003576XLOC_003576Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006256TCONS_00006256Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003972K_chnl_volt-dep_Kv1
IPR003968K_chnl_volt-dep_Kv
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 437..474
NoneNo IPR availableGENE3D1.10.287.70coord: 345..395
e-value: 2.5E-20
score: 71.9
NoneNo IPR availableGENE3D3.30.710.10coord: 65..166
e-value: 9.5E-17
score: 60.5
NoneNo IPR availableGENE3D1.20.5.110coord: 397..432
e-value: 1.4E-11
score: 43.3
NoneNo IPR availableGENE3D1.20.120.350coord: 193..344
e-value: 4.1E-35
score: 120.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 446..523
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 195..432
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 109..119
score: 88.91
coord: 95..106
score: 45.73
coord: 186..202
score: 55.67
coord: 152..163
score: 30.08
coord: 209..220
score: 75.61
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 322..330
score: 85.28
coord: 416..427
score: 86.18
coord: 108..118
score: 71.59
coord: 346..360
score: 64.33
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 108..127
score: 62.68
coord: 346..369
score: 66.19
coord: 189..217
score: 43.83
coord: 253..276
score: 47.04
coord: 405..431
score: 77.28
coord: 317..343
score: 72.16
coord: 279..299
score: 53.51
coord: 376..398
score: 80.95
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 66..166
e-value: 4.8E-5
score: 32.8
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 197..438
e-value: 1.8E-45
score: 155.0
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 68..157
e-value: 1.5E-25
score: 89.3
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 66..161

Blast
[Close]
BLAST of TCONS_00006256-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 498.049 bits (1281), Expect = 8.616e-173
Identity = 245/412 (59.47%), Postives = 308/412 (74.76%), Query Frame = 0 
Query:   47 SITKHHSITTDLSGDQSIPDRVVVNVSGLKFETLSETLEQYPESLLGNEDKRKAYFDEARNEYFFDRNRPAFDAILFYYQSGGKLLRPPNVPMDVFADEIRFYELGDEILQRVEREEGYIEEEEPIFPEREWQRKIWELFEYPDTSIGARIVAVISVCIITISIVTFCIETLPQFRYEKFNCTKMG-------NGSTVCQEREIRDDKAMPWFGIESACIVWFTFEYIMRFISSPQKLVFARSFLNLIDVIAIIPYYITL----------PMKTSNVSSLGVLRVIRLVRVFRIFKLSRHSRGLQILGHTLRASLRELGLLIFFLLIGVILFSSAVYYAEGGEKKT-FKSIPDAFWWAVVTMTTVGYGDMKPESAWGKIVGSLCAISGVLTIALPVPVIVSNFNYFYHRENE 440
            ++  H   T D   D    +RVV+N+SGL+FET  +TL Q+PE+LLG+  KR  YFD  RNEYFFDRNRP+FDAIL+YYQSGG+L RP NVP+D+F++EIRFYELG+E ++    +EGYI+EEE   PE E+QR++W LFEYP++S  ARI+A++SV +I ISIV+FC+ETLP FR E  +    G       N +   Q+     D   P+F +E+ CI+WF+FE+++RF + P K  F  + +N+ID++AIIPY+ITL            +     SL +LRVIRLVRVFRIFKLSRHS+GLQILG TL+AS+RELGLLIFFL IGVILFSSAVY+AE  E+++ F SIPDAFWWAVV+MTTVGYGDM P +  GKIVGSLCAI+GVLTIALPVPVIVSNFNYFYHRE E
Sbjct:   14 ALPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTD---PFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE 422
The following BLAST results are available for this feature:
BLAST of TCONS_00006256-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA28.616e-17359.47Potassium voltage-gated channel subfamily A member... [more]
back to top