TCONS_00005837-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005837-protein
Unique Name	TCONS_00005837-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	353

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005837-protein ID=TCONS_00005837-protein|Name=TCONS_00005837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MGCFKKKNQDDEEKTRRPSNSPFKQQQMKAWQPVLTASTVLPIFFLTAVV
FLPLGITLLVSSNGIREKIIEYTDNEACRQCITKDEGITSPDQNKFLACK
CEIKFKLNEKWDGDIYFYYGLDNFYQNHRRYVRSRDDAQLHGKLSDKVSP
NCAAPFDKGLVGNSTHNETRPIVPCGAVANSMFTDVFTLYHASDLSTTVP
LTSTGISWKSDRETKFKNPSPISKLDTFAKPKDWNIPISALDNQMVNEDF
IVWMRVAAFPTFRKLYRKLDTSSQVNKNYQDGLIIGEYTLKIDYNYPVKS
FGGKKKFIITTASWIGGKNSFLGTCYTVVGALCLVFGFVFLFIHKKHNKG
NSR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003330	XLOC_003330	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005837	TCONS_00005837	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005045	CDC50/LEM3_fam

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005045	CDC50/LEM3 family	PFAM	PF03381	CDC50	coord: 58..347 e-value: 2.2E-87 score: 293.0
IPR005045	CDC50/LEM3 family	PIRSF	PIRSF015840	Lem3/Cdc50	coord: 2..353 e-value: 5.0E-112 score: 372.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Blast

[Close]

BLAST of TCONS_00005837-protein vs. Swiss-Prot (Human)
Match: CC50B (Cell cycle control protein 50B OS=Homo sapiens GN=TMEM30B PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.629e-90
Identity = 146/350 (41.71%), Postives = 196/350 (56.00%), Query Frame = 0

Query:   15 TRRPSNSPFKQQQMKAWQPVLTASTVLPIFFLTAVVFLPLGITLLVSSNGIREKIIEYTDNEA---CRQCITKDEGITSPDQNKFLACKCEIKFKLNEKWDGDIYFYYGLDNFYQNHRRYVRSRDDAQLHGKLSDKVSP-NCAAPFDKGLVGNSTHNETRPIVPCGAVANSMFTDVFTLYHASDLS---TTVPLTSTGISWKSDRETKFKNPSPIS-----KLDTFAKPKDWNIPISAL-----DNQMVNEDFIVWMRVAAFPTFRKLYRKLDTSSQVNKNYQDGLIIGEYTLKIDYNYPVKSFGGKKKFIITTASWIGGKNSFLGTCYTVVGALCLVFGFVFLFIHKKH 347
              +P N+ F QQ++ AWQP+L+AS  LP+FF   + F+ LG+ L  SSNGI+E   +YT +     C  C    +G   P       C C   F L E + G +Y YY L NFYQN+RRY  SRDDAQL G  S    P N  AP+ +   G        PI PCGA+ANS+F D F+L+H          VPL  +GI+W +D   KF+NP  ++          A P +W  P+  L     +   +N+DF+VWMR AA PTFRKLY ++        NY  GL  G Y + I YNYPV++FGG K  I ++ SW+GGKN FLG  Y VVG+LC++ GFV L ++ ++
Sbjct:   10 AHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPP-----PCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAG-------LPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARIRQG-----NYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRY 342

The following BLAST results are available for this feature:

BLAST of TCONS_00005837-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005837-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CC50B	1.629e-90	41.71	Cell cycle control protein 50B OS=Homo sapiens GN=...	[more]

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TCONS_00005837-protein (polypeptide) - C. hemisphaerica