TCONS_00005670-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005670-protein
Unique NameTCONS_00005670-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005670-protein ID=TCONS_00005670-protein|Name=TCONS_00005670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MVDVAVSPTADERPSLLRKRVTQQNMADKAGYRLEGNLKFLNMLGFEAEA
MCCRFNSAGKLLAVGLANGAIKIFSMESKSITYSIPSPASNNKLPVTSVR
WKPAGKDVQQYGNIILAAYASGECRRWHVTTGKCLHISKEDAQLLACSYS
STGDHSIVSGSDGKIYLYDEETGNQIHVMEPSTNTEVMDGHVMRVFSVQY
NPSDDHTFISGGWDGTIQWWDTRVSNKYSIRKISGPHICGESLDIEPSTM
MIVAASWRKQKNLQIFDYGSGKEIKLIPEDYTKSMLYCAQWKDRDSLICG
GSHSNMLRLVDYASSQTTGRVLNIPGAVYSMDHNRHGNNPIIAFCTEKNL
FMVQDTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003205XLOC_003205Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005670TCONS_00005670Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR024977Apc4_WD40_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 181..221
e-value: 1.3E-5
score: 34.6
coord: 78..128
e-value: 17.0
score: 9.2
coord: 131..169
e-value: 0.062
score: 22.4
coord: 270..311
e-value: 140.0
score: 3.5
coord: 37..75
e-value: 1.9
score: 15.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 187..221
e-value: 0.011
score: 16.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 188..230
score: 12.146
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 122..179
e-value: 4.9E-9
score: 35.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 31..121
e-value: 2.5E-11
score: 42.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 180..356
e-value: 7.5E-18
score: 64.0
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 50..102
e-value: 9.3E-5
score: 22.6
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 43..230
score: 13.58
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 44..349

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005670-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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