TCONS_00005630-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005630-protein
Unique NameTCONS_00005630-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005630-protein ID=TCONS_00005630-protein|Name=TCONS_00005630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
FLLSFFICLFGNLLHISFKESVTLMATDGAEDKCRLCGKRIDGEVDKWYV
PYHSNCFKCSSCKVPLNPRNYFLTNKKQFYCFKHYDHDGPDKHGHFFREL
KQFRKYSIEKSKTSTVNGKTSPVKQHYQKNGLVKLDCKCSSGKSSGYWYE
CTFRNCPSSQCYLKSRDFKHFHVATWKITSGKSTTQIEHSEEELYEMCYH
GQRHANFYSVDERIGPIVLSLKHESIMKIPFYRILLRSSSHITEGLIPTT
SFCLNDYDDNAVLEVISRELDLTSDLRQFNDSIPPTKLLLLDKVMLKSEF
KIGVVFVDKDQLKEEQFFTNTTHSDDFEEFLTYLGEKISLKGFNGX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003189XLOC_003189Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005630TCONS_00005630Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR000331Rap_GAP_dom
Vocabulary: Biological Process
TermDefinition
GO:0051056regulation of small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005096GTPase activator activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051056 regulation of small GTPase mediated signal transduction
molecular_function GO:0005096 GTPase activator activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 33..84
e-value: 1.1E-6
score: 38.2
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 34..85
e-value: 3.0E-8
score: 33.7
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 32..91
score: 10.158
NoneNo IPR availableGENE3D2.10.110.10coord: 27..118
e-value: 1.2E-10
score: 41.0
NoneNo IPR availableCDDcd08368LIMcoord: 34..85
e-value: 1.59083E-7
score: 46.5419
IPR000331Rap GTPase activating protein domainPROSITEPS50085RAPGAPcoord: 288..346
score: 19.313
IPR000331Rap GTPase activating protein domainSUPERFAMILY111347Rap/Ran-GAPcoord: 192..345

Blast
[Close]
BLAST of TCONS_00005630-protein vs. Swiss-Prot (Human)
Match: SI1L2 (Signal-induced proliferation-associated 1-like protein 2 OS=Homo sapiens GN=SIPA1L2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 9.299e-16
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 0 
Query:  195 YEMCYHGQRHANFYSVDERIGPIVLSLKHESIMKIP-------FYRILLRSS------SHITEGLIPTTS--FCLNDYDDNAVLEVISRELDLTSDLRQFNDSIPPTKLLL-LDKVMLKSEFKIGVVFVDKDQLKEEQFFTNTTHSDDFEEFLTYLGEKISLKGFN 344
            Y   ++G+ H N++ +DE +GP+ +S++ E +            YR+  R+S        I E  IP+T+            VLE +  EL +   LRQ ++S   ++ LL LD+  L  + KIG+++    Q  EE+ + N T    FEEFL  LG+++ LKGF+
Sbjct:  487 YRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDAKEKEGSQFNYRVAFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQC-LRQASNSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFS 651
The following BLAST results are available for this feature:
BLAST of TCONS_00005630-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SI1L29.299e-1631.33Signal-induced proliferation-associated 1-like pro... [more]
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