TCONS_00005616-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005616-protein
Unique NameTCONS_00005616-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length892

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005616-protein ID=TCONS_00005616-protein|Name=TCONS_00005616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=892bp
ITLSRHIDNISVKRSEFKRKINFTGDEKMTVHPEPQLVVPEPSELLLGDS
TLVLSTNSSCEPPPLPPRDYGPNLPVENFDVSTEPADIRKDEQVDDGVPG
CVGLYNIGNTCFMNSALQCLLASPTLKDVFQRDYSNTPIAASFLQPLLER
LQELHKKINSGKYSILLPKEMHTAVSNLHPLFGDFKQHDSQEFISFVLNI
IHDFLNLSQETLPASRRQSDDFSDNITGEVSKRLKMDSASSSPSMDVDCE
EESLTKAELAWRVYLKTNRTAISDRFQGQYQSVMTCQKCGFVSTTFEPFM
MLSLSIPHAMEKQIVVTWVPSPKMFVTPGLPRVKRYLVTVRKSGLVQDLR
TKFFEMLKTEEDVDINPSTIVFAEVKNNANVKIVDNKTQIQYLSKSCTVY
AMEPINNDTSLFADNETNECHDTSMKSTGDEDDGIATWHTCNICLEEKFE
EDLMVHRSCNGTLCGECLQSTITHSQSTSGDFPCPSCQRFIDSKEGYEPM
RKKPRRSEPSEMNDDPLSLKTIATMPTDDPEQQQTWRKCSICLNETFNEE
LRIHATCGGLICQACLVIMTEYHENQNFQCPTCSVLINGQDYTRISENEE
DTRPRSRKVIVPVLFRYKQTLDEKADKIKFTLFGSPHICCLKSELSTQHV
EEVSSTLLQKYNIQQKSDIFITDSSGTSCGFCEYTSGCTGCRINEITDMK
LKPGCCLSITFYEEDRSVLNTLNYCKEDETMKLLRDSDVISLTECMQTFA
QIETLTEDNPWFCPACQSNQVSEKEMRVTRWPGTLIIHLKRFHFEESQGT
KISCPIDFPLSDLRVDLLSCPEALKVNCCPVYDLYGVVNHMGSLFGGHYT
AFAKQREEWYNFNDETFKKMHPTEDVDYQKEGYVLFYQMKDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003184XLOC_003184Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005616TCONS_00005616Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 441..487
e-value: 0.36
score: 15.1
coord: 539..583
e-value: 0.19
score: 17.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 539..584
score: 9.996
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 441..488
score: 9.893
NoneNo IPR availableGENE3D3.90.70.10coord: 95..892
e-value: 6.6E-86
score: 287.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 498..517
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 536..592
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 739..888
coord: 253..312
coord: 99..223
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 438..492
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 102..887
e-value: 7.0E-53
score: 179.6
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 103..118
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 832..849
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 102..890
score: 44.581

Blast
[Close]
BLAST of TCONS_00005616-protein vs. Swiss-Prot (Human)
Match: UBP15 (Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-28
Identity = 90/279 (32.26%), Postives = 133/279 (47.67%), Query Frame = 0 
Query:   77 ENFDVSTEPADIRKDEQVDDGVPGCVGLYNIGNTCFMNSALQCLLASPTLKDVFQRDYSNTPIAASFLQPLLER------LQELHKKINSGKYSILLPKEMHTAVSNLHPLFGDFKQHDSQEFISFVLNIIHDFLNLSQETLPASRRQSDDFSDNITGEVSKRLKMDSASSSPSMDVDCEEESLTKAELAWRVYLKTNRTAISDRFQGQYQSVMTCQKCGFVSTTFEPFMMLSLSIPHAMEKQIVVTWVPSPKMFVTPGLPRVKRYLVTVRKSGLVQDL 349
            +N+D S EP   R +EQ     PG  GL N+GNTCFMNSA+QCL  +P L + F  D     +  +F  PL  R        EL K++ SGK+S + P+   T V    P F  ++Q D QE ++F+L+ +H+ LN  ++      + +D   D +                              AE AW  +LK N + I D F G ++S + C +C  +S TF+PF  L+L +P   E+ + V  V      + P L +  +Y V V K G + DL
Sbjct:  272 KNYDYS-EPG--RNNEQ-----PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEEL--NFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV-----------------------------AEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVR-----MDP-LTKPMQYKVVVPKIGNILDL 505

HSP 2 Score: 101.679 bits (252), Expect = 6.563e-22
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 0 
Query:  740 ISLTECMQTFAQIETLTEDNPWFCPACQSNQVSEKEMRVTRWPGTLIIHLKRFHFEESQGTKISCPIDFPLSDLRV-DLLSCPEALKVNCCPV-YDLYGVVNHMGSLFGGHYTAFAKQREE--WYNFNDETFKKMHPTEDVDYQKEGYVLFYQMKDS 892
            + L +C++ F   E L  ++PW+CP C+ +Q + K++ +   P  L++HLKRF +      K+   +DFP++DL + + L  P     N  P  Y+L  V NH G + GGHYTAFAK +++  WY F+D +      +ED    K  YVLFYQ +D+
Sbjct:  786 VKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINP-----NAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTA--SEDQIVSKAAYVLFYQRQDT 935
The following BLAST results are available for this feature:
BLAST of TCONS_00005616-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP151.389e-2832.26Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo s... [more]
back to top