TCONS_00005132-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005132-protein
Unique NameTCONS_00005132-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005132-protein ID=TCONS_00005132-protein|Name=TCONS_00005132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MASTAVLRNLVRQSSKRVAKRNVPNQVFARTITQVDPKIPMKEFEKMKLP
DELAEYTGHVMYPDEFTGQWDKEQFVAEKGVTNMTLNFGPQHPAAHGVLR
LVLELNGEVVERADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMT
NEQVYSLAVEKLLNVQIPERAKWIRVMFGEITRILNHIMGITTHALDVGA
MTPFFWMFEEREKLMEFYERASGARMHAAYVRPGGVSQDLPLGLMDDIHD
FMTKFGQRIDEVEEMLTHNRIWKQRLVDIGVVTQEQALSFGMSGVMLRGS
GFKWDLRKVQPYDAYDQVDFDVPIGKNGDCYDRYLCRMEEMRQSMRIVFQ
CLNKMPPGEIKIDDAKVSPPKRSEMKESMEALIHHFKLYTEGYTVPPGET
YTAIEAPKGEMGVYLVSDGSSKPYRCKIRAPGFYHLASMDYMSRGHMLAD
VVAIIGTQDIVFGEVDR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002925XLOC_002925Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005132TCONS_00005132Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022885NDH1_su_D/H
IPR001135NADH_Q_OxRdtase_suD
IPR029014NiFe_Hase-like
IPR014029NADH_UbQ_OxRdtase_49kDa_CS
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0051287NAD binding
GO:0048038quinone binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0051287 NAD binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0048038 quinone binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022885NAD(P)H-quinone oxidoreductase subunit D/HTIGRFAMTIGR01962TIGR01962coord: 83..467
e-value: 5.4E-187
score: 619.3
IPR022885NAD(P)H-quinone oxidoreductase subunit D/HHAMAPMF_01358NDH1_NuoDcoord: 76..467
score: 49.268
IPR001135NADH-quinone oxidoreductase, subunit DPFAMPF00346Complex1_49kDacoord: 197..467
e-value: 3.3E-130
score: 432.9
IPR029014NiFe hydrogenase-likeGENE3D1.10.645.10coord: 79..283
e-value: 2.3E-64
score: 217.5
coord: 284..459
e-value: 4.8E-49
score: 167.0
IPR029014NiFe hydrogenase-likeSUPERFAMILY56762HydB/Nqo4-likecoord: 93..467
IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved sitePROSITEPS00535COMPLEX1_49Kcoord: 120..131

Blast
[Close]
BLAST of TCONS_00005132-protein vs. Swiss-Prot (Human)
Match: NDUS2 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 321/418 (76.79%), Postives = 365/418 (87.32%), Query Frame = 0 
Query:   55 EYTGHVMYPDEFTGQWDKEQF-----VAEKGVTNMTLNFGPQHPAAHGVLRLVLELNGEVVERADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQVYSLAVEKLLNVQIPERAKWIRVMFGEITRILNHIMGITTHALDVGAMTPFFWMFEEREKLMEFYERASGARMHAAYVRPGGVSQDLPLGLMDDIHDFMTKFGQRIDEVEEMLTHNRIWKQRLVDIGVVTQEQALSFGMSGVMLRGSGFKWDLRKVQPYDAYDQVDFDVPIGKNGDCYDRYLCRMEEMRQSMRIVFQCLNKMPPGEIKIDDAKVSPPKRSEMKESMEALIHHFKLYTEGYTVPPGETYTAIEAPKGEMGVYLVSDGSSKPYRCKIRAPGFYHLASMDYMSRGHMLADVVAIIGTQDIVFGEVDR 467
            ++ G VMYP + T  W    +       +  V N+TLNFGPQHPAAHGVLRLV+EL+GE+V + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ YSLAVEKLLN++ P RA+WIRV+FGEITR+LNHIM +TTHALD+GAMTPFFW+FEEREK+ EFYER SGARMHAAY+RPGGV QDLPLGLMDDI+ F   F  R+DE+EE+LT+NRIW+ R +DIGVVT E+AL++G SGVMLRGSG +WDLRK QPYD YDQV+FDVP+G  GDCYDRYLCR+EEMRQS+RI+ QCLNKMPPGEIK+DDAKVSPPKR+EMK SME+LIHHFKLYTEGY VPPG TYTAIEAPKGE GVYLVSDGSS+PYRCKI+APGF HLA +D MS+GHMLADVVAIIGTQDIVFGEVDR
Sbjct:   46 QFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
The following BLAST results are available for this feature:
BLAST of TCONS_00005132-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUS20.000e+076.79NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
back to top