TCONS_00004986-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004986-protein
Unique NameTCONS_00004986-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004986-protein ID=TCONS_00004986-protein|Name=TCONS_00004986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp
MVQQQTLLNGTTLASQLNGHMIQDNEQQSPTANKKMISNGIIQLKSTTSS
PSTDQPITSLNNIELETNKDMNDLNTTSTTISATNTEQSKSLTDKEDRKS
PNPQQQTKRETTPVSNDKQRQFTDKKQIRTTSHSSHSLSTYARSLRPGLV
PTPTVGGYPWHQASQMNWPANYYVAGGHQRHGQVNPIVYGYQPTAYIQYP
SHHVLGGGSHPNSSSSSQSTSRSNSTNPYSGDCELQDGEKLSKTNLYIRG
LPISTTDDDLVSMCKVYGNIISTKAILHKDTNQCKGYGFVDFDNPASAQR
AVASLQSQGVQAQMAKQQEQDPTNLYISNLPKTLDEQTLQQILMPYGNVI
STRILRDSNGCSKCVGFARMESKEICEKIINSLNGKYLQGSSDPLLVKFA
DGGPKKAKPDKVWRSHDESYMGYDVRSPVSSVPSQPTARVTPVVQNQMMS
PSGVNWGVQQQSYTVVSPQGVPVSPVDTATAMQSNITHMTNQMAQMQMHG
APSNNGQYIVPGGYPSAAAAHQNTWHGMSQQSHPQSNIQESPVIMTATEV
ESNYPPPQIQTTGPQQHMPHVVSSELYSDDQQNRVYYARK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002829XLOC_002829Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004986TCONS_00004986Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002343Hud_Sxl_RNA
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002343Paraneoplastic encephalomyelitis antigenPRINTSPR00961HUDSXLRNAcoord: 244..259
score: 40.42
coord: 328..343
score: 37.92
coord: 343..355
score: 42.31
coord: 383..400
score: 48.52
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 324..398
e-value: 8.3E-13
score: 58.6
coord: 245..313
e-value: 1.7E-15
score: 67.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 325..391
e-value: 2.4E-13
score: 49.6
coord: 246..308
e-value: 4.6E-13
score: 48.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 323..402
score: 14.675
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 244..317
score: 14.419
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 223..307
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 314..409
NoneNo IPR availableGENE3D3.30.70.330coord: 310..412
e-value: 4.1E-20
score: 71.6
coord: 66..309
e-value: 2.4E-22
score: 78.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..583
NoneNo IPR availableCDDcd12244RRM2_MSSPcoord: 323..401
e-value: 1.55343E-41
score: 143.642

Blast
[Close]
BLAST of TCONS_00004986-protein vs. Swiss-Prot (Human)
Match: RBMS3 (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.734e-81
Identity = 123/175 (70.29%), Postives = 145/175 (82.86%), Query Frame = 0 
Query:  238 GEKLSKTNLYIRGLPISTTDDDLVSMCKVYGNIISTKAILHKDTNQCKGYGFVDFDNPASAQRAVASLQSQGVQAQMAKQQEQDPTNLYISNLPKTLDEQTLQQILMPYGNVISTRILRDSNGCSKCVGFARMESKEICEKIINSLNGKYLQ------GSSDPLLVKFADGGPKK 406
            GE+LSKTNLYIRGLP  TTD DL+ +C+ YG I+STKAIL K+TNQCKGYGFVDFD+PA+AQ+AVASL++ GVQAQMAKQQEQDPTNLYISNLP ++DEQ L+ +L P+G+VISTRILRD+NG S+ VGFARMES E CE +I   NGKYL+        S+PLL KFADGG KK
Sbjct:   55 GEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229
The following BLAST results are available for this feature:
BLAST of TCONS_00004986-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBMS32.734e-8170.29RNA-binding motif, single-stranded-interacting pro... [more]
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