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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00004923-protein ID=TCONS_00004923-protein|Name=TCONS_00004923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MPLEKKIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQ
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRD
FIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQ
LIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWH
GDNMIESSTNMSWYKGWTTEGTTEEKKPFKESGKTLLEALDAIQPPKRPV
SKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSV
EMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTA
QVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPK
MVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVM
KKEKADGKXRVAH Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
| GO:0003746 | translation elongation factor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006414 | translational elongation |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006414 |
translational elongation |
| cellular_component |
GO:0005737 |
cytoplasm |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0003746 |
translation elongation factor activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000795 | Transcription factor, GTP-binding domain | PRINTS | PR00315 | ELONGATNFCT | coord: 107..118
score: 60.8
coord: 12..25
score: 68.18
coord: 91..101
score: 71.21
coord: 71..79
score: 77.92
coord: 151..160
score: 50.69 |
| IPR000795 | Transcription factor, GTP-binding domain | PROSITE | PS51722 | G_TR_2 | coord: 8..250
score: 58.518 |
| IPR004539 | Translation elongation factor EF1A, eukaryotic/archaeal | TIGRFAM | TIGR00483 | TIGR00483 | coord: 6..454
e-value: 9.2E-214
score: 707.6 |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal | PFAM | PF03143 | GTP_EFTU_D3 | coord: 342..449
e-value: 4.4E-41
score: 139.6 |
| None | No IPR available | PFAM | PF00009 | GTP_EFTU | coord: 8..242
e-value: 2.6E-51
score: 173.8 |
| None | No IPR available | GENE3D | 2.40.30.10 | | coord: 249..341
e-value: 3.8E-37
score: 125.9 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 5..246
e-value: 7.1E-40
score: 135.9 |
| None | No IPR available | GENE3D | 2.40.30.10 | | coord: 344..457
e-value: 1.8E-46
score: 156.7 |
| None | No IPR available | CDD | cd03693 | EF1_alpha_II | coord: 250..340
e-value: 2.81465E-57
score: 185.063 |
| None | No IPR available | CDD | cd01883 | EF1_alpha | coord: 12..247
e-value: 3.93515E-148
score: 423.441 |
| None | No IPR available | CDD | cd03705 | EF1_alpha_III | coord: 343..446
e-value: 1.34814E-67
score: 212.436 |
| IPR004161 | Translation elongation factor EFTu-like, domain 2 | PFAM | PF03144 | GTP_EFTU_D2 | coord: 268..333
e-value: 9.2E-15
score: 54.7 |
| IPR031157 | Tr-type G domain, conserved site | PROSITE | PS00301 | G_TR_1 | coord: 64..79 |
| IPR009000 | Translation protein, beta-barrel domain | SUPERFAMILY | 50447 | Translation proteins | coord: 246..341 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 6..269 |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal | SUPERFAMILY | 50465 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | coord: 346..449 |
Blast
BLAST of TCONS_00004923-protein vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1) HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0 Identity = 356/453 (78.59%), Postives = 395/453 (87.20%), Query Frame = 0 Query: 6 KIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWHGDNMIESSTNMSWYKGWTTEGTTEEKKPFKESGKTLLEALDAIQPPKRPVSKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSVEMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPKMVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVMKKEKADGK 458
K KTH++IVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF ++KY +TIIDAPGHRDFIKNMITGTSQADCAVLIVA+ GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNK+D+TEPPYS+ R++EI KE+ TY+KK+GYNP VA VPISGW+GDNM+E S NM W+KGW +K SG TLLEALD I PP RP KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFAP ++TEVKSVEMHHE+L+EA+PGDNVGFNVKNVSVK+++RG VA DSKNDP FTAQVIILNHPG+I AGY PVLDCHTAH+ACKFA L++KIDRRSGK LE+ PK +KSGDAA++++VP KPM VESFSDY PLGRFAVRDMRQTVAVGVIKAV KK GK
Sbjct: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKV-----TRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGK 450
The following BLAST results are available for this feature:
BLAST of TCONS_00004923-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EF1A1 | 0.000e+0 | 78.59 | Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... | [more] |
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