TCONS_00004865-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004865-protein
Unique NameTCONS_00004865-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004865-protein ID=TCONS_00004865-protein|Name=TCONS_00004865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MVSAGELFQKACNLIYLLFQMAIIWPWSMIKYFLPKNKKDISGEILFMSG
AGSGIGRLMSIKFAELGAIVICTDLNAETAEQTANTIKSNGGKAYSYQLD
VTDRLKVYALAEQIKREVGDVTMLINNAGIVTGKKILDAPDQLMVKTMEV
NTISHFWTLKAFLPSMLEKNHGHIVTVSSIAGHSGAPAMVDYCASKFGAV
GIHESLTVELIGIPDNKIQTSCVCPFFIKTGMFDGVSSGSPILLPLLEVD
FTVESIVCGVLNDEETIYVPRMLLPLMILKNLAPSALMKPLSDYLKLHTQ
MNDFKGRKEGKKAK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002756XLOC_002756Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004865TCONS_00004865Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 119..130
score: 49.87
coord: 45..62
score: 28.62
coord: 166..182
score: 35.26
coord: 192..211
score: 33.58
coord: 216..233
score: 26.31
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00080SDRFAMILYcoord: 192..211
score: 34.82
coord: 119..130
score: 51.99
coord: 172..180
score: 43.5
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 47..236
e-value: 4.2E-46
score: 156.8
NoneNo IPR availableGENE3D3.40.50.720coord: 30..238
e-value: 3.2E-52
score: 176.5
NoneNo IPR availableCDDcd0533917beta-HSDXI-like_SDR_ccoord: 45..287
e-value: 6.80143E-107
score: 313.41
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 36..296

Blast
[Close]
BLAST of TCONS_00004865-protein vs. Swiss-Prot (Human)
Match: RDHE2 (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 5.229e-92
Identity = 131/283 (46.29%), Postives = 195/283 (68.90%), Query Frame = 0 
Query:   28 SMIKYFLPKNKKDISGEILFMSGAGSGIGRLMSIKFAELGAIVICTDLNAETAEQTANTIKSNGG-KAYSYQLDVTDRLKVYALAEQIKREVGDVTMLINNAGIVTGKKILDAPDQLMVKTMEVNTISHFWTLKAFLPSMLEKNHGHIVTVSSIAGHSGAPAMVDYCASKFGAVGIHESLTVELIGIPDNKIQTSCVCPFFIKTGMFDGVSSGSPILLPLLEVDFTVESIVCGVLNDEETIYVPRMLLPLMILKNLAPSALMKPLSDYLKLHTQMNDFKGRKE 309
            +MI   LPK +K+++GEI+ ++GAGSG+GRL++++FA LG++++  D+N E  E+T    +  G  + ++Y  D + +  VY +A+Q+K+EVGDV++LINNAGIVTGKK LD PD+LM K+ +VN  +H WT KAFLP+M+  +HGH+V +SS AG SG   + DYCASKF A G  ES+ VE        I+T+ VCPFFIKTGMF+G ++G P LLP+LE  + VE IV  +L ++  +Y+P++L  +M LK+  P      ++DYL +   M+ F  +K+
Sbjct:   25 AMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGILHAMDGFVDQKK 307
The following BLAST results are available for this feature:
BLAST of TCONS_00004865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDHE25.229e-9246.29Epidermal retinol dehydrogenase 2 OS=Homo sapiens ... [more]
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