TCONS_00004690-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004690-protein
Unique NameTCONS_00004690-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length128

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004690-protein ID=TCONS_00004690-protein|Name=TCONS_00004690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MMHEPMDEDQYEDHDEEEDNGDDEITPEMWQEGCWTVISSYFEEKGLVRQ
QLDSFDEFIQMSVQRIVEESPAIELQSEVQYTEAEVEEPNRYSFKFEQIY
LSKPTFWEKDGSSKPMMPNEARLRNLTY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002643XLOC_002643Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004690TCONS_00004690Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 46..128
e-value: 6.1E-23
score: 81.3
NoneNo IPR availableGENE3D3.90.1100.10coord: 38..128
e-value: 6.2E-15
score: 54.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 26..128

Blast
[Close]
BLAST of TCONS_00004690-protein vs. Swiss-Prot (Human)
Match: RPB2 (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.114e-56
Identity = 87/116 (75.00%), Postives = 98/116 (84.48%), Query Frame = 0 
Query:   13 DHDEEEDNGDDEITPEMWQEGCWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPAIELQSEVQYTEAEVEEPNRYSFKFEQIYLSKPTFWEKDGSSKPMMPNEARLRNLTY 128
            D D + D  DDEITP++WQE CW VISSYF+EKGLVRQQLDSFDEFIQMSVQRIVE++P I+LQ+E Q+   EVEEP RY  KFEQIYLSKPT WE+DG+  PMMPNEARLRNLTY
Sbjct:    5 DEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY 120
The following BLAST results are available for this feature:
BLAST of TCONS_00004690-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPB21.114e-5675.00DNA-directed RNA polymerase II subunit RPB2 OS=Hom... [more]
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